SQUID specifications


Unique identifier OMICS_19970
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes



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  • person_outline Carl Kingsford <>

SQUID article

SQUID institution(s)
Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
SQUID funding source(s)
Supported by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative through Grant GBMF4554, by the US National Science Foundation (CCF-1256087, CCF-1319998) and by the US National Institutes of Health (R21HG006913, R01HG007104), and by the Curci Foundation, an Alfred P. Sloan Research Fellow, and a grant (#4100070287) with the Pennsylvania Department of Health.

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