SraTailor specifications

Information


Unique identifier OMICS_08684
Name SraTailor
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input format SRA
Output format BIGWIG
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Shinya Oki

Publication for SraTailor

SraTailor citations

 (2)
library_books

ChIP seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network

2017
PMCID: 5482983
PMID: 28455373
DOI: 10.1242/dev.143479

[…] gs. The Bowtie-aligned peaks and MACS-determined peak positions were visualized using IGV () and ChIP-Atlas (http://chip-atlas.org). The above data processing was performed using the software package SraTailor (). Peak overlaps were analyzed using Galaxy (), and the genomic spans given in BED format were converted to FASTA files using the UCSC Table Browser () in order to be analyzed for sequence […]

library_books

c Myb Binding Sites in Haematopoietic Chromatin Landscapes

2015
PLoS One
PMCID: 4514710
PMID: 26208222
DOI: 10.1371/journal.pone.0133280

[…] For analysis of c-Myb ChIP-Seq data from [], datasets were retrieved from NCBI Gene Expression Omnibus (GEO) (GSM1519643 and GSM1442006) and analysed with SraTailor [] using the programs standard settings for Bowtie2 [] and MACS []. ChIP-seq datasets for c-Myb were analysed for enrichment with corresponding control datasets. To calculate the fraction of […]

SraTailor institution(s)
Department of Developmental Biology, Graduate School of Medical Sciences, Kyushu University, Higashi-ku, Fukuoka, Japan

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