SRCP statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool SRCP
info

Tool usage distribution map

This map represents all the scientific publications referring to SRCP per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Bioinformatics workflows chevron_right
Want to access the full stats & trends on this tool?

Protocols

SRCP specifications

Information


Unique identifier OMICS_24243
Name SRCP
Alternative name Sequence Read Classification Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A graph (along with data and statistics) illustrating the composition of the query sequence set.
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Daniel Peterson

Publication for Sequence Read Classification Pipeline

SRCP citation

call_split

Characterization of the genome of bald cypress

2011
BMC Genomics
PMCID: 3228858
PMID: 22077969
DOI: 10.1186/1471-2164-12-553
call_split See protocol

[…] The HR sequence reads were analyzed using the Sequence Read Classification Pipeline (SRCP) previously described in Chouvarine et al. []. Additionally, the sequences were evaluated using the miniature inverted-repeat transposable element (MITE) id […]


Want to access the full list of citations?
SRCP institution(s)
Mississippi Genome Exploration Laboratory, Mississippi State University, Mississippi State, MS, USA; Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS, USA; Department of Computer Science & Engineering, Mississippi State University, Mississippi State, MS, USA; Institute for Digital Biology, Mississippi State University, Mississippi State, MS, USA
SRCP funding source(s)
Supported by Grant DBI-0421717 from the National Science Foundation, Grant 2006-34506-17290 from the U.S. Department of Agriculture Cooperative State Research, Education, and Extension Service, and a grant from the Mississippi Corn Promotion Board.

SRCP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SRCP