SRCP specifications
Information
| Unique identifier | OMICS_24243 |
|---|---|
| Name | SRCP |
| Alternative name | Sequence Read Classification Pipeline |
| Software type | Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Output data | A graph (along with data and statistics) illustrating the composition of the query sequence set. |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Version | 1.0 |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Maintainer
- person_outline Daniel Peterson <>
Publication for Sequence Read Classification Pipeline
library_books
An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.
2008 Anal Biochem
PMID: 17868636
DOI: 10.1016/j.ab.2007.08.008
SRCP institution(s)
Mississippi Genome Exploration Laboratory, Mississippi State University, Mississippi State, MS, USA; Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS, USA; Department of Computer Science & Engineering, Mississippi State University, Mississippi State, MS, USA; Institute for Digital Biology, Mississippi State University, Mississippi State, MS, USA
SRCP funding source(s)
Supported by Grant DBI-0421717 from the National Science Foundation, Grant 2006-34506-17290 from the U.S. Department of Agriculture Cooperative State Research, Education, and Extension Service, and a grant from the Mississippi Corn Promotion Board.
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