SRCP statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SRCP

Tool usage distribution map

This map represents all the scientific publications referring to SRCP per scientific context
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SRCP specifications


Unique identifier OMICS_24243
Alternative name Sequence Read Classification Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A graph (along with data and statistics) illustrating the composition of the query sequence set.
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes


No version available


  • person_outline Daniel Peterson

Publication for Sequence Read Classification Pipeline

SRCP citation


Characterization of the genome of bald cypress

BMC Genomics
PMCID: 3228858
PMID: 22077969
DOI: 10.1186/1471-2164-12-553
call_split See protocol

[…] The HR sequence reads were analyzed using the Sequence Read Classification Pipeline (SRCP) previously described in Chouvarine et al. []. Additionally, the sequences were evaluated using the miniature inverted-repeat transposable element (MITE) id […]

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SRCP institution(s)
Mississippi Genome Exploration Laboratory, Mississippi State University, Mississippi State, MS, USA; Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS, USA; Department of Computer Science & Engineering, Mississippi State University, Mississippi State, MS, USA; Institute for Digital Biology, Mississippi State University, Mississippi State, MS, USA
SRCP funding source(s)
Supported by Grant DBI-0421717 from the National Science Foundation, Grant 2006-34506-17290 from the U.S. Department of Agriculture Cooperative State Research, Education, and Extension Service, and a grant from the Mississippi Corn Promotion Board.

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