SRCP statistics

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Associated diseases

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SRCP specifications

Information


Unique identifier OMICS_24243
Name SRCP
Alternative name Sequence Read Classification Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A graph (along with data and statistics) illustrating the composition of the query sequence set.
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Daniel Peterson <>

Publication for Sequence Read Classification Pipeline

SRCP in publication

PMCID: 3228858
PMID: 22077969
DOI: 10.1186/1471-2164-12-553

[…] has a mean repetition frequency of 2054, 80% of elements in the component have iteration frequencies between 205.4 and 20,540., 743 high-quality hr capillary sequence reads were analyzed using the sequence read classification pipeline (srcp) of chouvarine et al. []. as shown in figure , the vast majority of reads (72.49%) showed no obvious (s' ≥ 60) homology to previously characterized repeat […]


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SRCP institution(s)
Mississippi Genome Exploration Laboratory, Mississippi State University, Mississippi State, MS, USA; Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS, USA; Department of Computer Science & Engineering, Mississippi State University, Mississippi State, MS, USA; Institute for Digital Biology, Mississippi State University, Mississippi State, MS, USA
SRCP funding source(s)
Supported by Grant DBI-0421717 from the National Science Foundation, Grant 2006-34506-17290 from the U.S. Department of Agriculture Cooperative State Research, Education, and Extension Service, and a grant from the Mississippi Corn Promotion Board.

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