srf2fastq specifications

Information


Unique identifier OMICS_05131
Name srf2fastq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SRF
Output format FASTQ
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Source code URL http://manpages.ubuntu.com/manpages.gz/trusty/man1/srf2fastq.1.gz
Maintained Yes

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srf2fastq in publication

PMCID: 5683705
PMID: 29158875
DOI: 10.1016/j.csbj.2017.09.003

[…] mutations were detected using the mutect algorithm . the rna sequencing data was generated from 539 tumor and 72 matched normal tissue samples. after poor quality reads were removed using the srf2fastq tool (staden package), the rna sequencing reads were aligned to reference transcript database using bwa algorithm . the genes that have the mean fragments per kilobase of transcript per […]


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srf2fastq institution(s)
Wellcome Trust Sanger Institute, Hinxton, UK

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