srf2fastq specifications

Information


Unique identifier OMICS_05131
Name srf2fastq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SRF
Output format FASTQ
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Source code URL http://manpages.ubuntu.com/manpages.gz/trusty/man1/srf2fastq.1.gz
Maintained Yes

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srf2fastq citation

2011
PMCID: 3201895

[…] public license. we also aim at keeping the tool updated as soon as more comprehensive and/or more performing tools will be available., after conversion of either srf or sra raw files to fastq (using srf2fastq - a tool part of the staden package [4] - in case of srf or the sra toolkit [5] in case of sra), quality control reports are generated using fastqc [6]. reads are then aligned […]

srf2fastq institution(s)
Wellcome Trust Sanger Institute, Hinxton, UK

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