Srfim specifications

Information


Unique identifier OMICS_10220
Name Srfim
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data INT or CIF
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Rafael Irizarry

Publication for Srfim

Srfim citation

library_books

Effective detection of rare variants in pooled DNA samples using Cross pool tailcurve analysis

2011
Genome Biol
PMCID: 3308056
PMID: 21955804
DOI: 10.1186/gb-2011-12-9-r93

[…] rt). SERVIC4E (release 1) does not call insertions or deletions.SNPSeeker was run on first cohort data using author recommended parameters. Reads (Illumina base calls) were converted to SCARF format. Srfim base calls could not be used due to an unknown formatting issue after SCARF conversion. Alignment was conducted against GRIP2 template sequences. Exons 6 and 7 reference sequences were merged so […]

Srfim institution(s)
Johns Hopkins Biostatistics, MD, USA

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