SRide statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SRide
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Tool usage distribution map

This map represents all the scientific publications referring to SRide per scientific context
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Protocols

SRide specifications

Information


Unique identifier OMICS_07145
Name SRide
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SRide

SRide citations

 (15)
library_books

Bearing based localization for leader follower formation control

2017
PLoS One
PMCID: 5398525
PMID: 28426706
DOI: 10.1371/journal.pone.0175378

[…] dard deviation of the measured noise is σγik=0.05.The parameters for the UKF and the input-output state feedback law are as follows:We set s(0) = [0.4474 2.4223 0 0.4360 2.4469 0 0.4126 1.816 0]T and sride=[0.455π/40.455π/40.755π/4]T, where the distances have units of meters and the angles have units of radians. The gains of the controller are k1 = 0.85 and k2 = 0.15. The other parameters of the U […]

library_books

In silico transcriptional regulation and functional analysis of dengue shock syndrome associated SNPs in PLCE1 and MICB genes

2016
PMCID: 4850189
PMID: 27038471
DOI: 10.1007/s10142-016-0489-9

[…] buried state is considered as functionally significant at the structural level of mutant protein (Chen and Zhou ).To identify the stabilizing residues of the native and mutant structures of protein, SRide server was used (Magyar et al. , ). Using the default threshold values (i.e., E value for BLAST, 0.001; conservation score threshold, 6; LRO threshold, 0.020; and surrounding hydrophobicity (Hp) […]

library_books

In Silico Computing of the Most Deleterious nsSNPs in HBA1 Gene

2016
PLoS One
PMCID: 4733110
PMID: 26824843
DOI: 10.1371/journal.pone.0147702

[…] SRide online server predicts the stabilizing residues (SRs) based on LRO (long range order), stabilization center, surrounding hydrophobicity and conservation score. The differences between native and […]

library_books

Structure based approach for understanding organism specific recognition of protein RNA complexes

2015
Biol Direct
PMCID: 4352265
PMID: 25886642
DOI: 10.1186/s13062-015-0039-8

[…] er of interactions stabilizing the T. thermophilus RS (90) is higher than E. coli (71) and S. cerevisiae (64). We have also estimated the number of stabilizing residues in these three organisms using SRide server [].We found that the T. thermophilus has the highest number of 51 stabilizing residues followed by E. coli (42) and S. cerevisiae (34).In addition, Table  provides the positional relation […]

library_books

Structure Based Network Analysis of Activation Mechanisms in the ErbB Family of Receptor Tyrosine Kinases: The Regulatory Spine Residues Are Global Mediators of Structural Stability and Allosteric Interactions

2014
PLoS One
PMCID: 4245119
PMID: 25427151
DOI: 10.1371/journal.pone.0113488

[…] es were identified using a combination of hydrophobicity, long-range order, stabilization center index and conservation score as described in . The computations were performed using web-based servers SRide and Scide . […]

library_books

An Approach to Identify SNPs in the Gene Encoding Acetyl CoA Acetyltransferase 2 (ACAT 2) and Their Proposed Role in Metabolic Processes in Pig

2014
PLoS One
PMCID: 4106792
PMID: 25050817
DOI: 10.1371/journal.pone.0102432

[…] The stabilising residues (SRide) tool was used to predict stabilising residues within native and mutant ACAT2 proteins of Sus scrofa. A residue is marked as stabilising if it has a high conservation score, high long-range orde […]


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SRide institution(s)
Institute of Enzymology Biological Research Center, Hungarian Academy of Sciences, Budapest, Hungary

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