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SRide specifications

Information


Unique identifier OMICS_07145
Name SRide
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SRide

SRide in publications

 (14)
PMCID: 5398525
PMID: 28426706
DOI: 10.1371/journal.pone.0175378

[…] deviation of the measured noise is σγik=0.05., the parameters for the ukf and the input-output state feedback law are as follows:, we set s(0) = [0.4474 2.4223 0 0.4360 2.4469 0 0.4126 1.816 0]t and sride=[0.455π/40.455π/40.755π/4]t, where the distances have units of meters and the angles have units of radians. the gains of the controller are k1 = 0.85 and k2 = 0.15. the other parameters […]

PMCID: 5131339
PMID: 27905547
DOI: 10.1038/srep37298

[…] protein stability predictors. here, the performance of 11 online stability predictors was analyzed: cupsat, dmutant, foldx, i-mutant2.0, i-mutant3.0, multimutate, mupro, scide, scpred, and sride. in total, 1,784 missense mutations in 80 different proteins were analyzed. the mutations were categorized as stabilizing, neutral, or destabilizing. the programs all predict stability […]

PMCID: 4850189
PMID: 27038471
DOI: 10.1007/s10142-016-0489-9

[…] view, providing the coordinate file of protein as the input (ahmad and gromiha ). for identification of the stabilizing residues in both native and mutant modeled structures, we used the server sride with parameters such as stabilization center, surrounding hydrophobicity, long-range order, and conservation score (magyar et al. , )., the effect of mutation on protein structure stability […]

PMCID: 4733110
PMID: 26824843
DOI: 10.1371/journal.pone.0147702

[…] amino acid residue substitutions or mutant structures were generated using the swiss-pdb viewer software []. energy minimization for the native and mutants were done using the gromacs program []., sride online server predicts the stabilizing residues (srs) based on lro (long range order), stabilization center, surrounding hydrophobicity and conservation score. the differences between native […]

PMCID: 4352265
PMID: 25886642
DOI: 10.1186/s13062-015-0039-8

[…] of interactions stabilizing the t. thermophilus rs (90) is higher than e. coli (71) and s. cerevisiae (64). we have also estimated the number of stabilizing residues in these three organisms using sride server [].we found that the t. thermophilus has the highest number of 51 stabilizing residues followed by e. coli (42) and s. cerevisiae (34)., in addition, table  provides the positional […]


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SRide institution(s)
Institute of Enzymology Biological Research Center, Hungarian Academy of Sciences, Budapest, Hungary

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