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SRmapper specifications

Information


Unique identifier OMICS_22141
Name SRmapper
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.1.5
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Chung Wong

Publication for SRmapper

SRmapper citation

library_books

Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles

2016
BMC Bioinformatics
PMCID: 5073887
PMID: 27766935
DOI: 10.1186/s12859-016-1216-1

[…] \setlength{\oddsidemargin}{-69pt} \begin{document}$\mathcal {r}$\end{document}r to the reference genome, we considered several popular aligners: bowtie2 [], bwa-sw [], cushaw2 [], smalt [], srmapper [], shrimp2 [], razers [], gassst [], seqalto [], masai [], and soap2 []. most aligners employed a seed-and-extend strategy, which first finds exact matches (seeds) between reads […]


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SRmapper institution(s)
Department of Chemistry and Biochemistry, Center for Nanoscience, University of Missouri-Saint Louis, One University Boulevard, St. Louis, MO, USA

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