Hosts a library of glycoproteins with their corresponding N-glycosites. SRMAtlas permits users to validate biomarker candidates by providing a collection of selected reaction monitoring (SRM) assays produced through three different mass spectrometric platforms. Users browse the database through five panels allowing transitions querying, transitions lists downloading, the browsing of specific builds and access to PeptideAtlas SRM Experiment Library (PASSEL) data and experiments.
Institute for Systems Biology, Seattle, WA, USA; Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland; Biognosys AG, Schlieren, Switzerland; Department of Chemical and Biomolecular Engineering, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China; Computational Biology Center, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Center for Infectious Disease Research, Seattle, WA, USA; Faculty of Science, University of Zurich, Zurich, Switzerland
SRMAtlas funding source(s)
Supported by the American Recovery and Reinvestment Act (ARRA) funds through National Institutes of Health, from the National Human Genome Research Institute grant RC2HG005805, the National Institute of General Medical Sciences under grant R01GM087221, S10RR027584 and 2P50 GM076547/Center for Systems Biology, the Luxembourg Centre for Systems Biomedicine/University Luxembourg, the European Research Council grant ERC-2008-AdG 233226 and ERC-2014-AdG 670821, the Swiss National Science Foundation (grant #31003A-130530), and a DAAD fellowship.