sRNA mapper specifications

Unique identifier:
OMICS_16365
Restrictions to use:
None
Input format:
FASTA
Programming languages:
Javascript, Perl
Stability:
Stable
Interface:
Web user interface
Input data:
The gene sequence, the selected sRNAdb.
Output data:
The sRNA reads mapped to the gene of interest, the phasing pattern of sRNAs mapped to the input sequence, the statistics for the length distribution and 5' end composition of sRNAs, the sRNA mapping profile.
Computer skills:
Basic
Maintained:
No
  • Plants
    • Arabidopsis thaliana

sRNA mapper support

Maintainer

This tool is not available anymore.

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Publications

Institution(s)

Department of Plant and Microbial Biology, Plant Gene Expression Center, University of California, Berkeley, CA, USA; United States Department of Agriculture-Agricultural Research Services, Albany, CA, USA

Funding source(s)

Supported by the National Science Foundation Plant Genome Research Program Grant (DBI-0218166) and the United States Department of Agriculture (CRIS 5335-22000- 007-00D).

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