Protocols

sRNAMap specifications

Information


Unique identifier OMICS_11141
Name sRNAMap
Restrictions to use None
Data access File download, Browse
Maintained Yes

Maintainer


  • person_outline Hsien-Da Huang

Publication for sRNAMap

sRNAMap citations

 (2)
library_books

In vitro Transcriptome Analysis of Two Chinese Isolates of Streptococcus suis Serotype 2

2014
PMCID: 4411499
PMID: 25526982
DOI: 10.1016/j.gpb.2014.11.001

[…] TARs without identified homologous genes were further compared with sRNAs in both sRNAMAP using BLAT(V35) and Rfam (11.0) using INFERNAL(1.1rc2) to identify the potential sRNAs. […]

call_split

Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

2011
PLoS Genet
PMCID: 3219608
PMID: 22125496
DOI: 10.1371/journal.pgen.1002377
call_split See protocol

[…] ding genes in E. coli. Genes were ranked according to free energy, with the lowest scoring predicted as targets. Known mRNA targets were compiled from published functional studies and the NPInter and sRNAMap databases. […]

sRNAMap institution(s)
Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsin-Chu, Taiwan; Institute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsin-Chu, Taiwan; Department of Biological Science and Technology, National Chiao Tung University, Hsin-Chu, Taiwan; Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-Chu, Taiwan
sRNAMap funding source(s)
The National Science Council of the Republic of China (Contract No. NSC 96-3112-E-009-002, NSC 95-2311-B-009-004-MY3 and 97-2627-B-009-007); National Research Program for Genomic Medicine (NRPGM), Taiwan; MOE ATU (Partial)

sRNAMap reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review sRNAMap