An integrated and comprehensive database comprising plentiful information about small non-coding RNA (sRNA). The sRNAMap provides a variety of interfaces and graphical visualization to present the plentiful information of sRNAs. Users can submit keywords or sequences to search the database. For each sRNA gene, the database provides the sequence, the genomic location, promoter information, secondary structures, literatures, annotations, expression profiles, sequence conservation and its transcriptional regulatory network. Additionally, the sRNAMap has the regulator/sRNA page and the sRNA/target page which provide the experimental conditions and the regulator/sRNA regulations and sRNA/target regulations.
Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsin-Chu, Taiwan; Institute of Molecular Medicine and Bioengineering, National Chiao Tung University, Hsin-Chu, Taiwan; Department of Biological Science and Technology, National Chiao Tung University, Hsin-Chu, Taiwan; Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-Chu, Taiwan
sRNAMap funding source(s)
The National Science Council of the Republic of China (Contract No. NSC 96-3112-E-009-002, NSC 95-2311-B-009-004-MY3 and 97-2627-B-009-007); National Research Program for Genomic Medicine (NRPGM), Taiwan; MOE ATU (Partial)