sRNAnalyzer specifications

Information


Unique identifier OMICS_23018
Name sRNAnalyzer
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli

Download


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Versioning


No version available

Maintainer


  • person_outline Kai Wang

Publication for sRNAnalyzer

sRNAnalyzer citation

library_books

Extracellular vesicle RNAs reflect placenta dysfunction and are a biomarker source for preterm labour

2018
J Cell Mol Med
PMCID: 5908130
PMID: 29516617
DOI: 10.1111/jcmm.13570

[…] es accession number GSE106224 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106224). The results were analysed using an in‐house small RNA analysis pipeline, sRNAnalyser (available at http://srnanalyzer.systemsbiology.net/), which contains three major components: data preprocessing, sequence mapping and results summarization. In the data preprocessing step, the adaptor sequences were trim […]

sRNAnalyzer institution(s)
Institute for Systems Biology, Seattle, WA, USA; Pacific Northwest Research Institute, Seattle, WA, USA
sRNAnalyzer funding source(s)
Supported by the US Department of Defense [W911NF-10–2-0111, HDTRA1–13-C-0055]; and National Institutes of Health (NIH) Extracellular RNA Communication Consortium (ERCC) [1U01HL126496].

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