sRNAnalyzer statistics

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Associated diseases

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sRNAnalyzer specifications

Information


Unique identifier OMICS_23018
Name sRNAnalyzer
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli

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Maintainer


  • person_outline Kai Wang <>

Publication for sRNAnalyzer

sRNAnalyzer in publication

PMCID: 5908130
PMID: 29516617
DOI: 10.1111/jcmm.13570

[…] accession number gse106224 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse106224). the results were analysed using an in‐house small rna analysis pipeline, srnanalyser (available at http://srnanalyzer.systemsbiology.net/), which contains three major components: data preprocessing, sequence mapping and results summarization. in the data preprocessing step, the adaptor sequences […]


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sRNAnalyzer institution(s)
Institute for Systems Biology, Seattle, WA, USA; Pacific Northwest Research Institute, Seattle, WA, USA
sRNAnalyzer funding source(s)
Supported by the US Department of Defense [W911NF-10–2-0111, HDTRA1–13-C-0055]; and National Institutes of Health (NIH) Extracellular RNA Communication Consortium (ERCC) [1U01HL126496].

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