sRNATarget specifications

Information


Unique identifier OMICS_11143
Name sRNATarget
Interface Web user interface
Restrictions to use None
Input data Choose bacterial genome, choose sRNA or enter your sRNA sequence and set the score.
Computer skills Basic
Version 2.0
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for sRNATarget

sRNATarget citations

 (2)
library_books

Identification of Novel Regulatory Small RNAs in Acinetobacter baumannii

2014
PLoS One
PMCID: 3976366
PMID: 24705412
DOI: 10.1371/journal.pone.0093833

[…] In order to predict target mRNA genes for the identified AbsR25, sRNATarget (http://ccb.bmi.ac.cn/srnatarget/prediction.php) and IntaRNA (http://rna.informatik.uni-freiburg.de:8080/IntaRNA.jsp) servers were used. Target genes with the score 1 in sRNAtarget were u […]

library_books

Genome Wide Identification of Small RNAs in the Opportunistic Pathogen Enterococcus faecalis V583

2011
PLoS One
PMCID: 3166299
PMID: 21912655
DOI: 10.1371/journal.pone.0023948

[…] of virulence .In order to predict target genes of the other sRNAs identified in this study, we performed in silico analysis (, ). Two different softwares were used for a more precise identification. sRNATarget server is based on the Naive Bayes probabilistic method and take RNA secondary structure profile as the feature . The second, IntaRNA, predicts interactions between two RNA molecules, and t […]

sRNATarget institution(s)
Beijing Institute of Basic Medical Sciences, Beijing, China
sRNATarget funding source(s)
This work was supported by the National High Technology Development Program of China under Grant No. 2006AA02Z323, and National Sciences Foundation of China under Grants 90608004 and 30470411.

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