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sRNAtoolbox

A collection of small RNA analysis tools. sRNAtoolbox is aimed to provide small RNA researchers with several useful tools including sRNA expression profiling from deep sequencing experiments and several downstream analysis tools. The center piece of sRNAtoolbox is sRNAbench, which allows the expression profiling and prediction of novel microRNAs in deep sequencing experiments. The other tools can be either launched on sRNAbench results, or independently using the appropriate file formats.

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sRNAtoolbox classification

sRNAtoolbox specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Stability:
Stable

Subtools

  • miRanalyzer
  • sRNAbench

sRNAtoolbox support

Documentation

Maintainer

  • Michael Hackenberg <>

Additional information

http://bioinfo2.ugr.es:8080/srnatoolbox/

Credits

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Publications

Institution(s)

Genomics and Bioinformatics Platform of Andalusia (GBPA), Edificio INSUR, Calle Albert Einstein, Sevilla, Spain; Centro de Genómica e Investigaciones Oncológicas, Pfizer-Universidad de Granada-Junta de Andalucía, Granada, Spain; Dpto. de Genética, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, Granada, Spain; Lab. de Bioinformática, Centro de Investigación Biomédica, PTS, Avda. del Conocimiento s/n, Granada, Spain

Funding source(s)

Ministerio de Economía y Competitividad from the Spanish Government [AGL2013-49090-C2-2-R]

Link to literature

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