Tool stats & trends
Looking to identify usage trends or leading experts?
|Alternative name||Signal Recognition Particle Database|
|Restrictions to use||None|
|User data submission||Not allowed|
Publications for Signal Recognition Particle Database
An Algorithm for Template Based Prediction of Secondary Structures of Individual RNA Sequences
[…] 2 sequences with pairwise sequence similarity within families ranging from 43 to 95% and sequence similarity to the templates of 20–93%. The sequences were downloaded from Rfam (Gardner et al., ) and SRPDB (Andersen et al., ) databases, or when unavailable in the databases, identified using corresponding papers cited in Table and downloaded from Genbank. As templates, the experimentally identifie […]
Archaea Signal Recognition Particle Shows the Way
[…] s are available through the links listed in Supplementary Material 2. In addition, the SRP database provides tables of alphabetically and phylogenetically sorted sequences at http://rnp.uthct.edu/rnp/SRPDB/SRPDB.html. […]
A fast structural multiple alignment method for long RNA sequences
[…] equences. The sequences of each multiple alignment were extracted from tRNA, Intron_gpII, 5S_rRNA, and U5 families in the Rfam 5.0 database and the signal recognition particle RNA family (SRP) in the SRPDB database . Because the dataset did not include consensus secondary structure annotations to the alignments, we used the secondary structure annotations recovered by Kiryu et al. .Kiryu et al […]
An enhanced RNA alignment benchmark for sequence alignment programs
[…] As a result, emerging alignment tools are generally not tested on non-coding RNA (ncRNA), despite the availability of rather reliable RNA alignments from databases like 5S Ribosomal RNA Database , SRPDB , or the tRNA database .The BRAliBase (Benchmark RNA Alignment dataBase) dataset used in the first comprehensive RNA alignment benchmark published so far  was constructed using alignments […]
Looking to check out a full list of citations?
Be the first to review SRPDB