SSAKE specifications

Unique identifier:
OMICS_00033
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

versioning

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No versioning.

SSAKE distribution

download

SSAKE support

Maintainer

  • Rene Warren <>

forum

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Credits

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Publications

Institution(s)

British Columbia Cancer Agency, Genome Sciences Centre, Vancouver, Canada; J. Craig Venter Institute, Rockville, MD, USA

User review

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2 user reviews

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2 user reviews

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Ahmed Nabiel's avatar image Ahmed Nabiel's country flag

Ahmed Nabiel

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The best short read assembler I could find!

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Nick

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Ssake is super easy to use and produces accurate results.
It is lightweight and has no dependencies, I highly recommend it. Because it uses coverage info, assemblies are stratified which makes it also suitable for transcriptome and meta genome assemblies. It is not as greedy as most people report, the correct path is chosen no based on longest overlap, but coverage and reads having a matching pairing partner already assembled