SSBD specifications


Unique identifier OMICS_12371
Alternative name Systems Science of Biological Dynamics
Restrictions to use None
Database management system PostgreSQL
Community driven No
Data access File download, Browse, Application programming interface
User data submission Not allowed
Content license CC Attribution
Maintained Yes


  • Bacteria
    • Escherichia coli
  • Invertebrates
    • Caenorhabditis elegans
    • Dictyostelium discoideum
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio



  • person_outline Shuichi Omi

Publication for Systems Science of Biological Dynamics

SSBD citations


Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data

PMCID: 4382901
PMID: 25414366
DOI: 10.1093/bioinformatics/btu767

[…] for the OpenGL) APIs. This result demonstrates the ease of developing software tools using the BDML format. All source codes and the executable JAR file of BDML4DViewer are available online at Fig. 11. […]


Global analysis of protein aggregation in yeast during physiological conditions and arsenite stress

PMCID: 4197440
PMID: 25217615
DOI: 10.1242/bio.20148938

[…] of the pooled data. Interactions with chaperones were based on data from () and results were analyzed with Student's t-test. Overrepresentation of co-translational Ssb2p substrates and aggregation in SSBΔ cells () was analyzed with Fisher's exact test. […]

SSBD institution(s)
Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Japan
SSBD funding source(s)
This work was supported in part by the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency (JST); Core Research for Evolutionary Science and Technology (CREST), JST; and the Strategic Programs for R&D (President’s Discretionary Fund) of RIKEN.

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