Tool stats & trends
Looking to identify usage trends or leading experts?
|Alternative name||Sequence, Structure and Conservation profiler|
|Interface||Web user interface|
|Restrictions to use||None|
Publication for Sequence, Structure and Conservation profiler
Bioinformatic tools for microRNA dissection
[…] volutionary conservation. The method implements a hierarchical HMM that utilizes region-based structural as well as sequence information of miRNA precursors. Another freely available prediction tool, SSCprofiler (,), harnesses a probabilistic method based on Profile HMMs, trained to recognize key biological miRNA features such as sequence, structure and conservation, to identify novel miRNA precur […]
MicroRNAs: New Biomarkers for Diagnosis, Prognosis, Therapy Prediction and Therapeutic Tools for Breast Cancer
[…] ing sets . Many tools of machine learning-based approaches for miRNA target prediction are currently available, e.g., HHMMiR , PicTar , MiRFinder , RNAmicro , , ProMiR , MiRRim , BayesMiRNAFind , and SSCprofiler .Other computational algorithms use approaches different from machine learning. The TargetScan algorithm was the first miRNA target prediction tool for human genome . It searches for perfe […]
A Review of Computational Tools in microRNA Discovery
[…] The commonly used tools among the methods directed to predict miRNAs from NGS data include miRDeep (Friedlander et al., ), miRanalyzer (Hackenberg et al., ), and SSCprofiler (Oulas et al., ). MiRDeep is able to discover previously known miRNAs as well as novel ones by using properties of miRNA biogenesis to score the compatibility of the position and frequency […]
Looking to check out a full list of citations?
Be the first to review SSCprofiler