Protocols

SSFinder specifications

Information


Unique identifier OMICS_09089
Name SSFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Publication for SSFinder

SSFinder citations

 (2)
library_books

Application of CRISPR/Cas9 in plant biology

2017
PMCID: 5443236
PMID: 28589077
DOI: 10.1016/j.apsb.2017.01.002

[…] are marked in green, yellow or red, which indicate the different specificity of the sgRNAs. In addition, there are some other tools, including E-CRISPR, CRISPR-P, Cas-OFFinder, Cas-Designer, Cas OT, SSFinder, which make the design of sgRNA become easier.The construction of expression vectors is diverse in its methodology. Some researchers, , , have constructed different binary vectors by combini […]

call_split

Resources for the design of CRISPR gene editing experiments

2015
Genome Biol
PMCID: 4661947
PMID: 26612492
DOI: 10.1186/s13059-015-0823-x
call_split See protocol

[…] d formatting to prepare input files. The user might further wish to specify certain pre-defined subsets of the genome (e.g., exomes) as a constraint for target site identification. Some tools such as SSFinder [] simply output the complete list of PAM sites, leaving the user to dictate subsequent site selection, whereas others such as E-CRISP [] and CRISPRseek [] offer additional criteria to filter […]

SSFinder institution(s)
National Agri-Food Biotechnology Institute, Department of Biotechnology, Government of India, Mohali, Punjab, India

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