ssizeRNA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ssizeRNA
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ssizeRNA specifications

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Unique identifier OMICS_15211
Name ssizeRNA
Alternative name Sample Size Calculation for RNA-Seq Experimental Design
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2.9
Stability Stable
Requirements
qvalue, limma, stats, graphics, Biobase, edgeR, knitr, MASS, R(≥3.2.3), ssize.fdr
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline Peng Liu
  • person_outline Ran Bi

Publication for Sample Size Calculation for RNA-Seq Experimental Design

ssizeRNA citation

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Transcriptome sequencing identified hub genes for hepatocellular carcinoma by weighted gene co expression analysis

2016
Oncotarget
PMCID: 5122405
PMID: 27220887
DOI: 10.18632/oncotarget.9555

[…] tially expressed lncRNA transcripts, six up-regulated and two down-regulated genes were identified.We estimated the statistical power for detecting significantly DEGs using ‘RnaSeqSampleSize’ [] and ‘ssizeRNA’ []. The genes with minimun read counts > 10 across all individuals (n = 11,076) genes was used. We also estimated the distributions of gene read count and dispersions using our RNA-seq data […]


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ssizeRNA institution(s)
Department of Statistics, Iowa State University, Snedecor Hall, Ames, IA, USA
ssizeRNA funding source(s)
Supported by the National Science Foundation Plant Genome Research Program under Award Number IOS-1127017.

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