ssizeRNA statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Experimental design chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ssizeRNA specifications

Information


Unique identifier OMICS_15211
Name ssizeRNA
Alternative name Sample Size Calculation for RNA-Seq Experimental Design
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2.9
Stability Stable
Requirements
qvalue, limma, stats, graphics, Biobase, edgeR, knitr, MASS, R(≥3.2.3), ssize.fdr
Source code URL https://cran.r-project.org/src/contrib/ssizeRNA_1.2.9.tar.gz
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Peng Liu <>
  • person_outline Ran Bi <>

Publication for Sample Size Calculation for RNA-Seq Experimental Design

ssizeRNA in publication

PMCID: 5122405
PMID: 27220887
DOI: 10.18632/oncotarget.9555

[…] expressed lncrna transcripts, six up-regulated and two down-regulated genes were identified., we estimated the statistical power for detecting significantly degs using ‘rnaseqsamplesize’ [] and ‘ssizerna’ []. the genes with minimun read counts > 10 across all individuals (n = 11,076) genes was used. we also estimated the distributions of gene read count and dispersions using our rna-seq […]


To access a full list of publications, you will need to upgrade to our premium service.

ssizeRNA institution(s)
Department of Statistics, Iowa State University, Snedecor Hall, Ames, IA, USA
ssizeRNA funding source(s)
Supported by the National Science Foundation Plant Genome Research Program under Award Number IOS-1127017.

ssizeRNA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ssizeRNA