SSPACE-LongRead pipeline

SSPACE-LongRead specifications

Information


Unique identifier OMICS_04686
Name SSPACE-LongRead
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Biological technology Pacific Biosciences
Operating system Unix/Linux
Programming languages C++, Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline SSPACE-LongRead <>

Publication for SSPACE-LongRead

SSPACE-LongRead citation

2017
PMCID: 5571409

[…] version 1.2 (6). the final assembled genome consisted of 451 mbp in 4,577 contigs, with 12.7× mean coverage. the largest contig size was 3,055,912 bp. scaffolds (2,396) were generated using sspace-longread (7). the n50 of the contigs was 250,325 bases, and the n50 of the scaffolds was 606,288 bases. the g+c content of the sf9 genome was 36.53%. the size of the sf9 genome […]

SSPACE-LongRead institution(s)
BaseClear BV, Genome analysis and technology department, Leiden, Netherlands
SSPACE-LongRead funding source(s)
This research was partially funded by the WBSO (BaseClear grant SO201305).

SSPACE-LongRead review

star_border star_border star_border star_border star_border
star star star star star
Hanseong Roh's avatar image No country

Hanseong Roh

star_border star_border star_border star_border star_border
star star star star star
Desktop
Too slow (very very very) at the last writing step.
But there are no choice.