SSrGE specifications


Unique identifier OMICS_14497
Name SSrGE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Starting and ending sites of genes.
Input format FASTQ
Output data A subset of expressed nucleotide variations.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.1.3
Stability Stable
Numpy, Scipy, SciKit-learn, Tabulate
Maintained Yes



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  • person_outline Olivier Poirion <>

Publication for SSrGE

SSrGE institution(s)
Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA; Molecular Biosciences and Bioengineering Graduate Program, University of Hawaii at Manoa, Honolulu, HI, USA
SSrGE funding source(s)
This work was supported by grants K01ES025434 awarded by NIEHS through funds provided by the NIH Big Data to Knowledge (BD2K) initiative, P20 COBRE GM103457 awarded by NIH/NIGMS, R01 LM012373 awarded by NLM, R01 HD084633 awarded by NICHD and Hawaii Community Foundation Medical Research Grant 14ADVC-64566.

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