SSrGE specifications

Unique identifier:
OMICS_14497
Interface:
Command line interface
Input data:
Starting and ending sites of genes.
Output data:
A subset of expressed nucleotide variations.
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ
Operating system:
Unix/Linux, Mac OS, Windows
License:
MIT License
Version:
1.1.3
Requirements:
Numpy, Scipy, SciKit-learn, Tabulate

versioning

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SSrGE distribution

download

SSrGE support

Documentation

Maintainer

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Publications

Institution(s)

Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI, USA; Molecular Biosciences and Bioengineering Graduate Program, University of Hawaii at Manoa, Honolulu, HI, USA

Funding source(s)

This work was supported by grants K01ES025434 awarded by NIEHS through funds provided by the NIH Big Data to Knowledge (BD2K) initiative, P20 COBRE GM103457 awarded by NIH/NIGMS, R01 LM012373 awarded by NLM, R01 HD084633 awarded by NICHD and Hawaii Community Foundation Medical Research Grant 14ADVC-64566.

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