SSW pipeline

SSW specifications

Information


Unique identifier OMICS_20525
Name SSW
Alternative name Striped Smith-Waterman
Software type Application/Script
Interface Application programming interface
Restrictions to use None
Programming languages C, C++, Java, Python
License MIT License
Computer skills Basic
Version 1.1
Stability Stable
Source code URL https://codeload.github.com/mengyao/Complete-Striped-Smith-Waterman-Library/tar.gz/v1.1
Maintained Yes

Maintainers


  • person_outline Mengyao Zhao <>
  • person_outline Wan-Ping Lee <>
  • person_outline Yongan Zhao <>
  • person_outline Daniel Cameron <>

Information


Unique identifier OMICS_20525
Name SSW
Alternative name Striped Smith-Waterman
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++, Java, Python
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Source code URL https://codeload.github.com/mengyao/Complete-Striped-Smith-Waterman-Library/tar.gz/v1.1
Maintained Yes

Download


Versioning


Add your version

Maintainers


  • person_outline Mengyao Zhao <>
  • person_outline Wan-Ping Lee <>
  • person_outline Yongan Zhao <>
  • person_outline Daniel Cameron <>

Publication for Striped Smith-Waterman

SSW IN pipeline

2016
PMCID: 5011931
PMID: 27595578
DOI: 10.1186/s12864-016-3030-6

[…] respectively., irma used defaults except for the maximum read gathering iteration and with the specified reference sets. maximum iterations for the final assembly stage (fig. 1b step 6, using ssw) were set to the default of 5. bowtie2 was run using a very-sensitive, local assembly with the resultant statistics and read-pair merging calculated using the same scripts as irma to normalize […]

SSW reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SSW