stalcalc specifications
Information
| Unique identifier | OMICS_13436 |
|---|---|
| Name | stalcalc |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | The user should provide a text file containing the organism genes' coding sequences. |
| Input format | FASTA |
| Output data | The tAI values of the input coding sequences and the wi values of each codon. |
| Output format | CSV |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | No |
Documentation
Maintainer
This tool is not available anymore.
Information
| Unique identifier | OMICS_13436 |
|---|---|
| Name | stalcalc |
| Software type | Application/Script |
| Interface | Graphical user interface |
| Restrictions to use | None |
| Input data | The first input is a file containing the organism coding sequence(s). The second input is a text file containing a list of anticodons (representing the different tRNA types) and their corresponding tRNA levels. |
| Input format | FASTA |
| Output data | Two output files are provided by stAIcalc application: output_tAI_file.txt (contains the names of the input genes and their resultant tAI values based on the species-specific inferred weights.) and output_tAI_file.txt (contains the weights for each codon.) |
| Output format | TXT |
| Operating system | Unix/Linux, Mac OS, Windows |
| Computer skills | Medium |
| Stability | Stable |
| Requirements | MATLAB runtime |
| Maintained | No |
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Documentation
Maintainer
This tool is not available anymore.
Publication for stalcalc
2016 Bioinformatics
PMID: 27797757
stalcalc institution(s)
Department of Biomedical Engineering, Tel Aviv University, Ramat Aviv, Israel; The Sagol School of Neuroscience, Tel Aviv University, Ramat Aviv, Israel
stalcalc funding source(s)
This work was supported by the Edmond J Safra Bioinformatics center at Tel Aviv University
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