stalcalc specifications

Unique identifier:
OMICS_13436
Restrictions to use:
None
Input format:
FASTA
Output format:
CSV
Stability:
Stable
Interface:
Web user interface
Input data:
The user should provide a text file containing the organism genes' coding sequences.
Output data:
The tAI values of the input coding sequences and the wi values of each codon.
Computer skills:
Basic
Maintained:
No

stalcalc specifications

Unique identifier:
OMICS_13436
Interface:
Graphical user interface
Input data:
The first input is a file containing the organism coding sequence(s). The second input is a text file containing a list of anticodons (representing the different tRNA types) and their corresponding tRNA levels.
Output data:
Two output files are provided by stAIcalc application: output_tAI_file.txt (contains the names of the input genes and their resultant tAI values based on the species-specific inferred weights.) and output_tAI_file.txt (contains the weights for each codon.)
Operating system:
Unix/Linux, Mac OS, Windows
Stability:
Stable
Maintained:
No
Software type:
Application/Script
Restrictions to use:
None
Input format:
FASTA
Output format:
TXT
Computer skills:
Medium
Requirements:
MATLAB runtime

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stalcalc distribution

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stalcalc support

Documentation

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Publications

Institution(s)

Department of Biomedical Engineering, Tel Aviv University, Ramat Aviv, Israel; The Sagol School of Neuroscience, Tel Aviv University, Ramat Aviv, Israel

Funding source(s)

This work was supported by the Edmond J Safra Bioinformatics center at Tel Aviv University

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