stalcalc specifications

Information

Unique identifier	OMICS_13436
Name	stalcalc
Interface	Web user interface
Restrictions to use	None
Input data	The user should provide a text file containing the organism genes' coding sequences.
Input format	FASTA
Output data	The tAI values of the input coding sequences and the wi values of each codon.
Output format	CSV
Computer skills	Basic
Stability	No
Maintained	Yes

Documentation

Documentation: http://tullerlab.azurewebsites.net/Resources/stAIcalc_User_Guide.pdf

Maintainer

Tamir Tuller <>

Information

Unique identifier	OMICS_13436
Name	stalcalc
Software type	Application/Script
Interface	Graphical user interface
Restrictions to use	None
Input data	The first input is a file containing the organism coding sequence(s). The second input is a text file containing a list of anticodons (representing the different tRNA types) and their corresponding tRNA levels.
Input format	FASTA
Output data	Two output files are provided by stAIcalc application: output_tAI_file.txt (contains the names of the input genes and their resultant tAI values based on the species-specific inferred weights.) and output_tAI_file.txt (contains the weights for each codon.)
Output format	TXT
Operating system	Unix/Linux, Mac OS, Windows
Computer skills	Medium
Stability	No
Requirements	MATLAB runtime
Maintained	Yes

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Documentation

Documentation: http://tullerlab.azurewebsites.net/Resources/stAIcalc_User_Guide.pdf

Maintainer

Tamir Tuller <>

Publication for stalcalc

StAIcalc: tRNA adaptation index calculator based on species-specific weights.

2016 Bioinformatics

PMID: 27797757

stalcalc in publications

(2)

Prevalence of dry eye syndrome in residents of surgical specialties

PMCID: 4947365

PMID: 27422541

DOI: 10.1186/s12886-016-0292-3

[…] quantitative variables. any p value < 0.05 was considered statistically significant., sample size for cross-sectional studies was assessed considering an alpha of 0.05 and a beta of 0.20 using stalcalc in epi info™, version 6.0 (atlanta: centers for disease control and prevention; 1994), in which it was estimated to find des in 30 % of the residents of the surgical area, where 125 […]

Are parents and adolescents in agreement on reporting of recurrent non specific low back pain in adolescents? A cross sectional descriptive study

PMCID: 4673738

PMID: 26645723

DOI: 10.1186/s12887-015-0518-1

[…] were 71 458 school-children in the 55 government administered schools in harare. as the primary outcome was prevalence of recurrent nslbp, minimum sample size of 495 was calculated using epi info stalcalc based on the following parameters: regional prevalence of 13.5 % [], a precision effect of 3 %, a design effect of 1 and 95 % confidence interval., schools and participants were recruited […]

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stalcalc institution(s)

Department of Biomedical Engineering, Tel Aviv University, Ramat Aviv, Israel; The Sagol School of Neuroscience, Tel Aviv University, Ramat Aviv, Israel

stalcalc funding source(s)

This work was supported by the Edmond J Safra Bioinformatics center at Tel Aviv University

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