stalcalc specifications

Information


Unique identifier OMICS_13436
Name stalcalc
Interface Web user interface
Restrictions to use None
Input data The user should provide a text file containing the organism genes' coding sequences.
Input format FASTA
Output data The tAI values of the input coding sequences and the wi values of each codon.
Output format CSV
Computer skills Basic
Stability No
Maintained Yes

Documentation


Maintainer


  • person_outline Tamir Tuller <>

Information


Unique identifier OMICS_13436
Name stalcalc
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data The first input is a file containing the organism coding sequence(s). The second input is a text file containing a list of anticodons (representing the different tRNA types) and their corresponding tRNA levels.
Input format FASTA
Output data Two output files are provided by stAIcalc application: output_tAI_file.txt (contains the names of the input genes and their resultant tAI values based on the species-specific inferred weights.) and output_tAI_file.txt (contains the weights for each codon.)
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability No
Requirements
MATLAB runtime
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Tamir Tuller <>

Publication for stalcalc

stalcalc in publications

 (2)
PMCID: 4947365
PMID: 27422541
DOI: 10.1186/s12886-016-0292-3

[…] quantitative variables. any p value < 0.05 was considered statistically significant., sample size for cross-sectional studies was assessed considering an alpha of 0.05 and a beta of 0.20 using stalcalc in epi info™, version 6.0 (atlanta: centers for disease control and prevention; 1994), in which it was estimated to find des in 30 % of the residents of the surgical area, where 125 […]

PMCID: 4673738
PMID: 26645723
DOI: 10.1186/s12887-015-0518-1

[…] were 71 458 school-children in the 55 government administered schools in harare. as the primary outcome was prevalence of recurrent nslbp, minimum sample size of 495 was calculated using epi info stalcalc based on the following parameters: regional prevalence of 13.5 % [], a precision effect of 3 %, a design effect of 1 and 95 % confidence interval., schools and participants were recruited […]


To access a full list of publications, you will need to upgrade to our premium service.

stalcalc institution(s)
Department of Biomedical Engineering, Tel Aviv University, Ramat Aviv, Israel; The Sagol School of Neuroscience, Tel Aviv University, Ramat Aviv, Israel
stalcalc funding source(s)
This work was supported by the Edmond J Safra Bioinformatics center at Tel Aviv University

stalcalc reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review stalcalc