stalcalc statistics

info info

Citations per year

info

Popular tool citations

chevron_left Translational efficiency prediction chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

stalcalc specifications

Information


Unique identifier OMICS_13436
Name stalcalc
Interface Web user interface
Restrictions to use None
Input data The user should provide a text file containing the organism genes' coding sequences.
Input format FASTA
Output data The tAI values of the input coding sequences and the wi values of each codon.
Output format CSV
Computer skills Basic
Stability No
Maintained Yes

Documentation


Maintainer


  • person_outline Tamir Tuller <>

Information


Unique identifier OMICS_13436
Name stalcalc
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data The first input is a file containing the organism coding sequence(s). The second input is a text file containing a list of anticodons (representing the different tRNA types) and their corresponding tRNA levels.
Input format FASTA
Output data Two output files are provided by stAIcalc application: output_tAI_file.txt (contains the names of the input genes and their resultant tAI values based on the species-specific inferred weights.) and output_tAI_file.txt (contains the weights for each codon.)
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability No
Requirements
MATLAB runtime
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Tamir Tuller <>

Publication for stalcalc

stalcalc citations

 (2)
library_books

Prevalence of dry eye syndrome in residents of surgical specialties

2016
PMCID: 4947365
PMID: 27422541
DOI: 10.1186/s12886-016-0292-3

[…] quantitative variables. any p value < 0.05 was considered statistically significant., sample size for cross-sectional studies was assessed considering an alpha of 0.05 and a beta of 0.20 using stalcalc in epi info™, version 6.0 (atlanta: centers for disease control and prevention; 1994), in which it was estimated to find des in 30 % of the residents of the surgical area, where 125 […]

library_books

Are parents and adolescents in agreement on reporting of recurrent non specific low back pain in adolescents? A cross sectional descriptive study

2015
PMCID: 4673738
PMID: 26645723
DOI: 10.1186/s12887-015-0518-1

[…] were 71 458 school-children in the 55 government administered schools in harare. as the primary outcome was prevalence of recurrent nslbp, minimum sample size of 495 was calculated using epi info stalcalc based on the following parameters: regional prevalence of 13.5 % [], a precision effect of 3 %, a design effect of 1 and 95 % confidence interval., schools and participants were recruited […]


Want to access the full list of citations?
stalcalc institution(s)
Department of Biomedical Engineering, Tel Aviv University, Ramat Aviv, Israel; The Sagol School of Neuroscience, Tel Aviv University, Ramat Aviv, Israel
stalcalc funding source(s)
This work was supported by the Edmond J Safra Bioinformatics center at Tel Aviv University

stalcalc reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review stalcalc