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Standards (biological research)

Organizations which develop standards for biological research data quality, annotation and exchange.

MIAME
Nontypeable

MIAME Minimum Information About a Microarray Experiment

European Bioinformatics Institute, EMBL outstation, Wellcome Trust Genome…

European Bioinformatics Institute, EMBL outstation, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Centre d’Immunologie de Marseille Luminy (CIML TAGC) & Universite de la Mediterranee,…

FCS
Format

FCS Flow Cytometry Standard

Facilitates the development of software for reading and writing flow cytometry…

Facilitates the development of software for reading and writing flow cytometry data. The goal of the Flow Cytometry Standard (FCS) is to provide a uniform file format that allows files created by any…

ProCon
Desktop

ProCon PROteomics CONversion Tool

A Java application for conversion of data from Proteomics files or a LIMS…

A Java application for conversion of data from Proteomics files or a LIMS (Laboratory Information Management System) database into standard formats. ProCon converts Sequest.out, ProteinScape® and…

G T A T C G C T A
SBMLPkgSpec
Desktop

SBMLPkgSpec

Furnishes a LaTeX document class corresponding to a standard document format…

Furnishes a LaTeX document class corresponding to a standard document format for SBML Level 3 package. SBMLPkgSpec contains a wide range of features such as: (i) define SBML package version and SBML…

SCGS
Dataset

SCGS SysCilia Gold Standard

Provides a list of verified ciliary genes, which can be used as a reference…

Provides a list of verified ciliary genes, which can be used as a reference dataset of cilia genes. SCGS facilitates determination of objective cut-off thresholds via receiver operator characteristic…

MultiCellDS
Dataset

MultiCellDS MultiCellular Data Standard

A community-developed standard to functionally describe cell phenotypes with…

A community-developed standard to functionally describe cell phenotypes with contextual information from the microenvironment. MultiCellDS is a library of over 200 digital cell lines contained a…

MINSEQE
Nontypeable

MINSEQE Minimum Information about a high-throughput SEQuencing Experiment

Provides information about high-throughput nucleotide sequencing experiments.…

Provides information about high-throughput nucleotide sequencing experiments. MINSEQE avoids ambiguous interpretation and facilitates reproducibility of the results of experiments. Its utilization…

Typeset
Desktop

Typeset

Permits an intuitive writing and collaboration, with the rigor and power of…

Permits an intuitive writing and collaboration, with the rigor and power of LaTeX. Typeset is a writing and collaboration tool for research papers and thesis documents. This editor comes with…

SPARC
Nontypeable

SPARC Scholarly Publishing and Academic Resources Coalition

Enables the open sharing of research outputs and educational materials. SPARC…

Enables the open sharing of research outputs and educational materials. SPARC aims to democratize access to knowledge, accelerate discovery, and increase the return on our investment in research and…

HoenEtAl2013
Nontypeable

HoenEtAl2013

Reproducibility of high-throughput mRNA and small RNA sequencing across…

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

Nekrutenko,Tayl…
Nontypeable

Nekrutenko,Taylor2012

Next-generation sequencing data interpretation: enhancing reproducibility and…

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility.

GargisEtAl2012
Nontypeable

GargisEtAl2012

Assuring the quality of next-generation sequencing in clinical laboratory…

Assuring the quality of next-generation sequencing in clinical laboratory practice.

GSC
Nontypeable

GSC Genomic Standards Consortium

The goal of this international community is to promote mechanisms that…

The goal of this international community is to promote mechanisms that standardize the description of genomes and the exchange and integration of genomic data.

HUPO-PSI
Nontypeable

HUPO-PSI HUPO Proteomics Standards Inititative

Defines community standards for data representation in proteomics to facilitate…

Defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification.

ISO
Nontypeable
MAGE
Nontypeable

MAGE MicroArray and Gene Expression

Aims to provide a standard for the representation of microarray expression data…

Aims to provide a standard for the representation of microarray expression data that would facilitate the exchange of microarray information between different data systems. MAGE is a microarray data…

MAQC
Nontypeable

MAQC MicroArray Quality Control

The project is helping improve the microarray and next-generation sequencing…

The project is helping improve the microarray and next-generation sequencing technologies and foster their proper applications in discovery, development and review of FDA regulated products.

MIGen
Nontypeable

MIGen Minimum Information about a Genotyping Experiment

Recommends the standard information required to report a genotyping experiment,…

Recommends the standard information required to report a genotyping experiment, covering: study and experiment design, subject information, genotyping procedure, and data analysis methods.

Nex-StoCT
Nontypeable

Nex-StoCT

These guidelines represent initial steps to ensure that results from tests…

These guidelines represent initial steps to ensure that results from tests based on next-generation sequencing (NGS) are reliable and useful for clinical decision making.

CCMC
Nontypeable

CCMC Cancer Cytogenomics Microarray Consortium

The mission of the consortium is to promote communication and collaboration…

The mission of the consortium is to promote communication and collaboration among cancer cytogenomics laboratories.

CLSI
Nontypeable

CLSI Clinical and Laboratory Standards Institute

CLSI is setting the standard for quality in clinical laboratory testing around…

CLSI is setting the standard for quality in clinical laboratory testing around the world.

FGED
Nontypeable

FGED Functional Genomics Data Society

Works with other organizations to develop standards for biological research…

Works with other organizations to develop standards for biological research data quality, annotation and exchange.

GEUVADIS
Nontypeable
Information

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