Consists of a single-entry point to all minimum information checklists from the Genomic Standards Consortium (GSC) and to the environmental packages. MIxS is a framework that includes the technology-specific checklists from the MIGS and MIMS standards, provides a way of introducing additional checklists such as MIMARKS, and also allows annotation of sample data using environmental packages relevant to any genome sequence of known origin.
A Java application for conversion of data from Proteomics files or a LIMS (Laboratory Information Management System) database into standard formats. ProCon converts Sequest.out, ProteinScape® and ProteomeDiscoverer® identification results, and outputs semantically enriched annotation of data in mzIdentML data format. ProCon can assist in preparing data submission to public repositories as recommended in the paper publication guidelines of major proteomics journals.
Furnishes data standards for high-throughput biological experiments. FuGE has been developed to facilitate data management and the creation of repositories, software or standards. It can also produce modular data transfer standards and complete workflow formats. It intends to solve the challenges brought by developing data standards that are resilient to evolution in technology and to provide a single format for laboratory workflows.
Provides open-source packages implementing the MAGE Object Model (MAGE-OM) in several programming languages. MAGE-STK is a suite of software developed to facilitate adoption of MAGE. The toolkit aims to provide an intermediate object layer that can then be used to export data to MAGE-ML, to store data in a persistent data store such as a relational database, or as input to software-analysis tools.
Permits an intuitive writing and collaboration, with the rigor and power of LaTeX. Typeset is a writing and collaboration tool for research papers and thesis documents. This editor comes with in-built tools for research related actions, removing all unwanted complexity in the research writing process. It enables with powerful tools to easily perform actions like adding and citing references, creating scientific expressions, cross referencing tables/equations/figures.
Furnishes a LaTeX document class corresponding to a standard document format for SBML Level 3 package. SBMLPkgSpec contains a wide range of features such as: (i) define SBML package version and SBML validation rules; (ii) format the names of common SBML object classes and XML primitive data types (iii) create new package-specific definitions (iv) use customized commands for cross-referencing sections, tables and figures.
Allows creation of clinical decision aids. DECIDE facilitates supportive functions of a genetic counsellor through patient-centred education and enhanced decision-making. It enables users to work individually, as a couple or family, or with a relative or friend, allowing patients to make decisions in ways that they find most comfortable and supportive. This tool provides an opportunity to make a decision about pharmacogenomics incidental findings or carrier status for recessive diseases.