StarBioTrek statistics

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Associated diseases

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StarBioTrek specifications

Information


Unique identifier OMICS_26185
Name StarBioTrek
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Requirements
AnnotationDbi, grid, testthat, BiocStyle, grDevices, R(>=3.3), rmarkdown, knitr, org.Hs.eg.db, igraph, ROCR, e1071, png, KEGGREST, devtools, roxygen2, qgraph, SpidermiR
Maintained Yes

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Documentation


Maintainers


  • person_outline Claudia Cava <>
  • person_outline Isabella Castiglioni <>

Publications for StarBioTrek

StarBioTrek in publication

PMCID: 5756345
PMID: 29304754
DOI: 10.1186/s12864-017-4423-x

[…] to the functional networks) with more genes in the pathway than expected, its role is functionally central in that pathway., figureĀ  shows the proposed procedure. the code is made available in the starbiotrek package (http://bioconductor.org/packages/release/bioc/html/starbiotrek.html).fig. 1, using the keggrest [] and starbiotrek [] packages, we downloaded 307 pathways from the kegg database […]


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StarBioTrek institution(s)
Institute of Molecular Bioimaging and Physiology (IBFM), National Research Council (CNR), Milan, Italy; Interuniversity Institute of Bioinformatics in Brussels (IB), Brussels, Belgium; Machine Learning Group, ULB, Brussels, Belgium; Department of Informatics, Systems and Communications, University of Milan-Bicocca, Milan, Italy
StarBioTrek funding source(s)
Supported by a research project INTEROMICS flagship, National Research Council CUP Grant B91J12000190001, and by the project grant SysBioNet, Italian Roadmap Research Infrastructures 2012.

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