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Starcode specifications

Information


Unique identifier OMICS_07707
Name Starcode
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Guillaume Filion <>

Publication for Starcode

Starcode in pipeline

2016
PMCID: 5118689
PMID: 27874090
DOI: 10.1038/srep37563

[…] of the purity parameter was conducted inside the r statistical package () with bioconductor shortread package with critical components implemented from stand-alone software projects such as bbmap, starcode and bowtie2 (see materials and methods for details or the full git repository at https://bitbucket.org/mnm-lu/workflowlibrary4)., the barcode structure in this experiment was generated […]

Starcode in publication

PMCID: 5118689
PMID: 27874090
DOI: 10.1038/srep37563

[…] genome editing. the generated plasmid libraries are also useful for validation of sequencing clustering algorithms and we here validate the newly presented message passing clustering process named starcode., massively parallel in vitro or in vivo interrogation of genetic sequence or protein function has recently seen a rapid development. this is due to a combination of technological […]

Starcode institution(s)
Genome Architecture, Gene Regulation, Stem Cells and Cancer Programme, Centre for Genomic Regulation (CRG), Barcelona and Universitat Pompeu Fabra (UPF), Barcelona, Spain

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