STarMir statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left miRNA target prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

STarMir specifications

Information


Unique identifier OMICS_06687
Name STarMir
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for STarMir

STarMir in publications

 (16)
PMCID: 5786039
PMID: 29374200
DOI: 10.1038/s41598-018-19806-z

[…] at low concentration (0.1 nm), the mir-29b mimic repressed tet3 luciferase reporters but had no effect on tet1 and tet2, indicating a dose-dependent target regulation of mir-29b (fig. ). using starmir to model mrna secondary structure, we found that tet3 3′utr contains more accessible mir-29b binding sites than tet1 and tet2 3′utrs (supplementary table ), providing a potential explanation […]

PMCID: 5731802
PMID: 28805496
DOI: 10.1080/15476286.2017.1356564

[…] sequence search was performed using blast (basic local alignment search tool, https://blast.ncbi.nlm.nih.gov/blast.cgi). to search for potential microrna-like binding sites in the c-myc locus we used starmir, a web server tool within the sfold suite that identifies sites based on feature similarities with experimentally defined mirna binding events. the entire coding sequence (cds) of c-myc and 2  […]

PMCID: 5459991
PMID: 28555645
DOI: 10.1038/ncomms15622

[…] profile (h-plot) of the s-parna allelic variants was done using sfold. diana microt and targetscan were used to identify putative targets of isomir-4534 and mir-4534 in 3′utr of mrnas. rnahybrid and starmir, an application module of the sfold software, were used to identify potential binding sequences of isomir-4534 and mir-4534 in the s-parna., pcdna+ plasmids with −668/−57 (a or c), −476/−57 […]

PMCID: 5354610
PMID: 28327787
DOI: 10.1590/0074-02760160404

[…] sites common to the four reference sequences were selected. among the mirnas that fulfilled these criteria, mir-484 and mir-744 were predicted in our analysis () using the rnahybrid program. the starmir program predicted the potential binding sites for mir-484 and mir-744 in the denv 3′ utr as the target sequences (). each of the candidate sites was assigned a logistic probability […]

PMCID: 5286401
PMID: 28145491
DOI: 10.1038/srep41381

[…] two different algorithms, targetscan and mirwalk were used to demonstrate that the 3′-utr of ncr2 mrna contains a putative target site for the seed region of mir-181a (). moreover, the starmir software which predicts multiple potential mirna:target mrna bindings, first by predicting target secondary structures then by calculating the total energy change of the hybridisation, […]


To access a full list of publications, you will need to upgrade to our premium service.

STarMir institution(s)
Wadsworth Center, New York State Department of Health, Center for Medical Science, Albany, NY, USA; Department of Genetics and Yale Stem Cell Center, Yale University, New Haven, CT, USA

STarMir reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review STarMir