STarMir statistics

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STarMir specifications


Unique identifier OMICS_06687
Name STarMir
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for STarMir

STarMir in publications

PMCID: 5786039
PMID: 29374200
DOI: 10.1038/s41598-018-19806-z

[…] at low concentration (0.1 nm), the mir-29b mimic repressed tet3 luciferase reporters but had no effect on tet1 and tet2, indicating a dose-dependent target regulation of mir-29b (fig. ). using starmir to model mrna secondary structure, we found that tet3 3′utr contains more accessible mir-29b binding sites than tet1 and tet2 3′utrs (supplementary table ), providing a potential explanation […]

PMCID: 5731802
PMID: 28805496
DOI: 10.1080/15476286.2017.1356564

[…] sequence search was performed using blast (basic local alignment search tool, to search for potential microrna-like binding sites in the c-myc locus we used starmir, a web server tool within the sfold suite that identifies sites based on feature similarities with experimentally defined mirna binding events. the entire coding sequence (cds) of c-myc and 2  […]

PMCID: 5459991
PMID: 28555645
DOI: 10.1038/ncomms15622

[…] profile (h-plot) of the s-parna allelic variants was done using sfold. diana microt and targetscan were used to identify putative targets of isomir-4534 and mir-4534 in 3′utr of mrnas. rnahybrid and starmir, an application module of the sfold software, were used to identify potential binding sequences of isomir-4534 and mir-4534 in the s-parna., pcdna+ plasmids with −668/−57 (a or c), −476/−57 […]

PMCID: 5354610
PMID: 28327787
DOI: 10.1590/0074-02760160404

[…] sites common to the four reference sequences were selected. among the mirnas that fulfilled these criteria, mir-484 and mir-744 were predicted in our analysis () using the rnahybrid program. the starmir program predicted the potential binding sites for mir-484 and mir-744 in the denv 3′ utr as the target sequences (). each of the candidate sites was assigned a logistic probability […]

PMCID: 5286401
PMID: 28145491
DOI: 10.1038/srep41381

[…] two different algorithms, targetscan and mirwalk were used to demonstrate that the 3′-utr of ncr2 mrna contains a putative target site for the seed region of mir-181a (). moreover, the starmir software which predicts multiple potential mirna:target mrna bindings, first by predicting target secondary structures then by calculating the total energy change of the hybridisation, […]

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STarMir institution(s)
Wadsworth Center, New York State Department of Health, Center for Medical Science, Albany, NY, USA; Department of Genetics and Yale Stem Cell Center, Yale University, New Haven, CT, USA

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