STARNET statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

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STARNET specifications

Information


Unique identifier OMICS_06064
Name STARNET
Interface Web user interface
Restrictions to use None
Input data A gene symbol or a Entrez ID.
Programming languages Perl
Database management system MySQL
Computer skills Basic
Stability No
Maintained No

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio
    • Gallus gallus

Subtool


  • HeatSeeker

Maintainers


This tool is not available anymore.

Publications for STARNET

STARNET in publications

 (91)
PMCID: 5940825
PMID: 29739930
DOI: 10.1038/s41467-018-03621-1

[…] lt; 2.5 × 10−7 in 36 tissue models and p < 0.05 for the remaining four tissue models)., pcsk9 is a target of several ldl-c lowering drugs currently under trial to reduce cardiovascular events. the starnet study profiled gene expression levels in cardiometabolic disease patients and showed tag snp rs12740374 to be a strong eqtl for pcsk9 in visceral fat but not in liver. consistent with this, ou […]

PMCID: 5832790
PMID: 29497042
DOI: 10.1038/s41467-018-03395-6

[…] search for evidence of the functional effects of hr profile associated snps, we used multiple qtl databases including the following: stockholm–tartu atherosclerosis reverse network engineering task (starnet), gtex, version 6, cis-eqtl datasets of blood–, and cis-meqtls. only eqtls/meqtls that achieved p < 1 × 10−6 and were in ld (r2 > 0.8) with the queried snp were considered significant., […]

PMCID: 5780460
PMID: 29362436
DOI: 10.1038/s41598-017-18769-x

[…] affiliations., v.m.p. is supported by the nsf under grants career-eccs-1651433 and iis-1447470. s.p. is supported in part by the terraswarm research center, one of six centers supported by the starnet phase of the focus center research program (fcrp) a semiconductor research corporation program sponsored by marco and darpa. c.o.b. is supported by capes, coordenação de aperfeiçoamento de […]

PMCID: 5760711
PMID: 29317631
DOI: 10.1038/s41467-017-02491-3

[…] note: springer nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations., this work was supported in part by c-spin, one of six centers of starnet, a semiconductor research corporation program, sponsored by marco and darpa. we would like to thank timothy peterson and gordon stecklein at university of minnesota for their help […]

PMCID: 5844249
PMID: 29527417
DOI: 10.7717/peerj.4466

[…] (; ; ; ; ; )., here, we analyzed transcriptome-wide rna editing in one large cohort of patients with coronary artery disease—the stockholm-tartu atherosclerosis reverse network engineering task (starnet) () study. we implemented a novel detection pipeline with several systematic filtering steps to deliver a refined set of rna editing events. our pipeline borrows ideas from published methods […]


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STARNET institution(s)
Department of Systems Biology and Translational Medicine, College of Medicine, Texas A & M Health Science Center, Temple, TX, USA
STARNET funding source(s)
Supported by a National Scientist Development Grant from the American Heart Association (AHA SDG 0630263N), an American Heart Association Postdoctoral Fellowship (AHA 0825110F), by start-up funds from the Dean of the College of Medicine and the Department of Systems Biology and Translational Medicine, Texas A&M Health Science Center.

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