StarORF statistics

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Citations per year

Number of citations per year for the bioinformatics software tool StarORF
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Tool usage distribution map

This map represents all the scientific publications referring to StarORF per scientific context
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Associated diseases

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Popular tool citations

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StarORF specifications

Information


Unique identifier OMICS_29194
Name StarORF
Interface Web user interface
Restrictions to use None
Programming languages Java
License BSD 2-clause “Simplified” License
Computer skills Basic
Stability Stable
Maintained Yes

Download


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Documentation


Additional information


http://star.mit.edu/orf/userguide/usermanual.html

Information


Unique identifier OMICS_29194
Name StarORF
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Shell (Bash)
License BSD 2-clause “Simplified” License
Computer skills Advanced
Stability Stable
Requirements
JRE
Maintained Yes

Download


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Versioning


No version available

Documentation


Additional information


http://star.mit.edu/orf/userguide/usermanual.html

StarORF citations

 (4)
library_books

The genome of the emerging barley pathogen Ramularia collo cygni

2016
BMC Genomics
PMCID: 4979122
PMID: 27506390
DOI: 10.1186/s12864-016-2928-3

[…] sequences known to be involved in the biosynthesis of aflatoxin [, ] and dothistromin []. Contig17 was analysed as a potential gene cluster for additional genes involved in toxin production using the StarORF application (HTML version; Massachusetts Institute of Technology, USA). Putative open reading frames (ORF) were identified on Contig17 and the protein sequences screened against the NCBI nr pr […]

library_books

Nicotinic Acetylcholine Receptor Subunits α4 and α5 Associated with Smoking Behaviour and Lung Cancer Are Regulated by Upstream Open Reading Frames

2013
PLoS One
PMCID: 3699600
PMID: 23843950
DOI: 10.1371/journal.pone.0066157

[…] CHRNA3, CHRNA4 isoform 1 and 2, CHRNA5, CHRNA7 and CHRNB3 (coding for nAChR subunits α3, α4, α5, α7 and ß3) were screened for in-frame start and stop codons upstream of the main start codon with the StarORF Finder (http://star.mit.edu/orf/runapp.html). SNPs validated by SNP gene view of NCBI and located within the uORF sequence or creating/deleting a uORF were considered for investigation (). […]

library_books

Extensive Alternative Splicing of the Repressor Element Silencing Transcription Factor Linked to Cancer

2013
PLoS One
PMCID: 3628349
PMID: 23614038
DOI: 10.1371/journal.pone.0062217

[…] Prediction of the open reading frame (ORF) of specific REST variants was performed by using the StarORF program (http://star.mit.edu/orf/runapp.html), and epigenetic information at the REST locus was retrieved from the UCSC Genome Browser (http://genome.ucsc.edu/cgi-bin/hgGateway). Comparisons o […]

library_books

Open Reading Frame Phylogenetic Analysis on the Cloud

2013
Int J Genomics
PMCID: 3647537
PMID: 23671843
DOI: 10.1155/2013/614923

[…] Fs and converts them to amino acid codes, declaring their respective positions in the sequence. Pairwise alignment also detects mutations, including single-nucleotide polymorphisms between sequences. StarORF [] facilitates identification of the protein(s) encoded within a DNA sequence. First, the DNA sequence is transcribed into RNA, and all potential ORFs are identified. These ORFs are encoded wi […]


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