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Starr

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Facilitates comparative analysis of ChIP-chip data across experiments and across different microarray platforms. Starr provides functions for data import, quality assessment, data visualization and exploration. It includes high-level analysis tools such as the alignment of ChIP signals along annotated features, correlation analysis of ChIP signals with complementary genomic data, peak-finding and comparative display of multiple clusters of binding profiles. It uses standard Bioconductor classes for maximum compatibility with other software. Moreover, Starr automatically updates microarray probe annotation files by a highly efficient remapping of microarray probe sequences to an arbitrary genome. Finally, Starr enables systematic assessment of binding behaviour for groups of genes that are alingned along arbitrary genomic features.

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Starr forum

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Starr classification

Starr specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Stability:
Stable
Interface:
Command line interface
Biological technology:
Affymetrix
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

Starr distribution

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No versioning.

Starr support

Documentation

Credits

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Publications

Institution(s)

Gene Center, Department of Chemistry and Biochemistry, Ludwig-Maximilians-University of Munich, Munich, Germany

Link to literature

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