STASNet specifications

Unique identifier:
OMICS_25993
Interface:
Command line interface
Input data:
A file containing the perturbation data in MIDAS format, the network structure as a two-columned table describing the links and the nodes with basal activity.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
0.9
Requirements:
ginac, cln, Rcpp, RhpcBLASctl, Rgraphviz, pheatmap, lattice, lhs, parallel
Software type:
Package/Module
Restrictions to use:
None
Input format:
CSV+DAT
Programming languages:
C, C++, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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STASNet distribution

download

STASNet support

Maintainers

  • Bertram Klinger <>
  • Mathurin Dorel <>
  • Nils Bluethgen <>

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Publications

Institution(s)

Institute of Pathology, Charite Universitatsmedizin, Berlin, Germany; IRI Life Sciences, Humboldt University of Berlin, Berlin, Germany; Berlin Institute of Health, Berlin, Germany; Division of Molecular Carcinogenesis, The Netherlands Cancer Institute, Amsterdam, Netherlands

Funding source(s)

Supported by the Federal Ministry of Education and Research of Germany (BMBF) through grants ZiSS and ColoSys, as well as through funding by the Berlin Institute of Health.

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