SWAN specifications

Unique identifier:
OMICS_12197
Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
C++, R
Stability:
Stable
Maintained:
Yes
Name:
Statistical Structural Variant Analysis for NGS
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
GCC, Samtools, R::RcppArmadillo, Rcpp, BH, data.table, devtools, digest, hash, methods, optparse, parallel, plyr, robustbase, sets, stringr, zoo, BioConductor::Biobase, Biostrings, BSgenome, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools

versioning

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No versioning.

SWAN support

Documentation

Maintainer

  • Li C. Xia <>

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Credits

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Publications

Institution(s)

Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA; Department of Statistics, the Wharton School, University of Pennsylvania, Philadelphia, PA, USA; Stanford Genome Technology Centre, Stanford University, Palo Alto, CA, USA; Department of Statistics, Stanford University, Stanford, CA, USA

Funding source(s)

National Institutes of Health (NIH) [2R01HG006137-04 and P01HG00205ESH] and National Science Foundation (NSF)

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