Statnet statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Statnet
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Tool usage distribution map

This map represents all the scientific publications referring to Statnet per scientific context
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Associated diseases

This word cloud represents Statnet usage per disease context
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Popular tool citations

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Protocols

Statnet specifications

Information


Unique identifier OMICS_23629
Name Statnet
Alternative name statnetWeb
Interface Web user interface
Restrictions to use None
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Martina Morris
  • person_outline Mark Handcock

Additional information


https://statnet.shinyapps.io/statnetWeb/ https://statnet.org/ https://github.com/statnet/statnetWeb

Information


Unique identifier OMICS_23629
Name Statnet
Alternative name statnetWeb
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2016.9
Stability Stable
Requirements
R(≥3.0), tergm(≥3.4), ergm.count(≥3.2.2), sna(≥ 2.4), statnet.common(≥3.3), network(≥1.13), networkDynamic(≥ 0.9), ergm(≥3.6), networksis(≥2.1.3), degreenet(≥1.3.1), relevent(≥ 1.0.4), ndtv(≥0.10), EpiModel(≥1.2.7), latentnet(≥ 2.7.1), tsna(≥0.2)
Maintained Yes

Download


download.png
download.png

Versioning


No version available

Documentation


Maintainers


  • person_outline Martina Morris
  • person_outline Mark Handcock

Additional information


https://statnet.shinyapps.io/statnetWeb/ https://statnet.org/ https://github.com/statnet/statnetWeb

Publication for Statnet

Statnet citations

 (29)
library_books

Effective Network Size Predicted From Simulations of Pathogen Outbreaks Through Social Networks Provides a Novel Measure of Structure Standardized Group Size

2018
PMCID: 5943561
PMID: 29774217
DOI: 10.3389/fvets.2018.00071

[…] rrelating idealized networks with disease transmission times, we generated maximally complete, unweighted, undirected networks for groups of size 3–200 in R, version 3.3.2 () with packages igraph (), statnet (), and functions that we developed and distribute in enss. We then simulated SI models (with a per contact transmission rate, β, of 0.10, and per capita interactions per day set at three time […]

library_books

Sharing based social capital associated with harvest production and wealth in the Canadian Arctic

2018
PLoS One
PMCID: 5846769
PMID: 29529040
DOI: 10.1371/journal.pone.0193759

[…] g ties were assigned a network density of 1.0 (the highest possible value). The dataset used in the analyses is described in and provided in .Analyses were conducted in R [], using the igraph [] and statnet [] packages for the manipulation and analysis of the food sharing networks. Linear regressions were conducted in a Bayesian paradigm, via MCMC simulation [, ]. Models were run using the rjags […]

call_split

HIV transmission and pre exposure prophylaxis in a high risk MSM population: A simulation study of location based selection of sexual partners

2017
PLoS One
PMCID: 5708822
PMID: 29190784
DOI: 10.1371/journal.pone.0189002
call_split See protocol

[…] in less than 2 days. The rate of new partnerships creation was chosen to balance dissolutions, so that the average number of partnerships in the population remained constant over time. The R package statnet was used to simulate ST-ERGM [–]. […]

library_books

Adaptive social strategies in a solitary carnivore

2017
Sci Adv
PMCID: 5636203
PMID: 29026880
DOI: 10.1126/sciadv.1701218

[…] ar to the empirical network, demonstrating that the models were well fit to the data; GOF plots are included in fig. S1. All analyses were carried out in R version 3.3.1 (). Network analyses used the statnet suite of R packages (, ), except modularity, which was measured using the igraph package (). […]

library_books

Modeling the live pig trade network in Georgia: Implications for disease prevention and control

2017
PLoS One
PMCID: 5466301
PMID: 28599000
DOI: 10.1371/journal.pone.0178904

[…] l model. MCMC chain mixing and convergence analysis for each of the parameters were examined by trace plots and marginal density plots. Analyses were carried out in R language [], using igraph, mice, statnet and coda packages [, –]. […]

library_books

Using Exponential Random Graph Models to Analyze the Character of Peer Relationship Networks and Their Effects on the Subjective Well being of Adolescents

2017
Front Psychol
PMCID: 5389982
PMID: 28450845
DOI: 10.3389/fpsyg.2017.00583

[…] Statnet’s ERGM R software package was used to conduct statistical analysis. The study applied MCMC MLE to conduct parameter estimations. First, peer relationship networks in each class were built acco […]


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Statnet institution(s)
Department of Statistics, University of Washington, Seattle, WA, USA; Department of Statistics, PennState University, PA, USA; Institute for Mathematical Behavioral Sciences, University of California, Irvine, CA, USA; University of Washington, Seattle, WA, USA
Statnet funding source(s)
Supported by two grants from the National Institutes of Health (R01-HD041877, R01-DA012831), an additional funding from Le Studium, an agency of the Centre National de la Recherche Scientifique of France, and NIH grant R01-GM083603-01.

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