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Information


Unique identifier OMICS_03143
Name StellaBase
Alternative name nematoStella genomics dataBase
Restrictions to use None
Maintained No

Publication for nematoStella genomics dataBase

StellaBase citations

 (10)
call_split

New Disulfide Stabilized Fold Provides Sea Anemone Peptide to Exhibit Both Antimicrobial and TRPA1 Potentiating Properties

2017
Toxins
PMCID: 5450702
PMID: 28468269
DOI: 10.3390/toxins9050154
call_split See protocol

[…] The BLAST search engine [], the Antimicrobial Peptide Database [], the InterProScan tool [] and StellaBase [] was used to search for homologues sequences. The SignalP4.1 server [] was used to predict the potential cleavage site of the signal peptide with the default setting for D-cutoff values a […]

library_books

A pre metazoan origin of the CRK gene family and co opted signaling network

2016
Sci Rep
PMCID: 5043372
PMID: 27686861
DOI: 10.1038/srep34349

[…] or the cephalochordate B. floridae; personal communication with Chris Lowe for the hemichordate S. kowalevskii; http://skatebase.org/ for the little skate Leucoraja erinacea; http://cnidarians.bu.edu/stellabase/ for the sea anemone Nematostella vectensis; and http://blast.ncbi.nlm.nih.gov/Blast.cgi for other species). When available, genomic information was also used to confirm RNA sequences. In s […]

library_books

Cadherin 23 May Be Dynamic in Hair Bundles of the Model Sea Anemone Nematostella vectensis

2014
PLoS One
PMCID: 3899209
PMID: 24465885
DOI: 10.1371/journal.pone.0086084

[…] g to residues 750–761 in the cytoplasmic C-terminus of a homolog of TRPA1 in N. vectensis . The peptide sequence was unique to the TRPA1 sequence (SB17686) in the online N. vectensis genome database, StellaBase. The epitope that binds the TRPA1 antibody is predicted to reside in the cytoplasm. Therefore, no effect of this antibody on vibration-dependent discharge of nematocysts was expected.Vibrat […]

library_books

The evolutionary origin of the Runx/CBFbeta transcription factors – Studies of the most basal metazoans

2008
BMC Evol Biol
PMCID: 2527000
PMID: 18681949
DOI: 10.1186/1471-2148-8-228

[…] ig Venter Institute []. The Nematostella genome was searched using keyword and blastp/tblastx searches of the assembled genome and expressed sequences at the Nematostella vectensis Genomics Database (StellaBase) site [,]. Genomic and coding sequences from other taxa were searched at NCBI (Table ). […]

library_books

Evolution of hedgehog and hedgehog related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif

2008
BMC Genomics
PMCID: 2362128
PMID: 18334026
DOI: 10.1186/1471-2164-9-127

[…] program []. The T. spiralis genome was searched using the GSC blast server at The Genome Sequencing Center of the Washington University School of Medicine []. N. vectensis sequences were searched at Stellabase [,], and at the DOE Joint Genome Institute (JGI) []. Additional genome sequences such as for Naegleria gruberi, Physcomitrella patens and Monosiga brevicollis were searched at the JGI []. Z […]

library_books

The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis regulatory motif, a common destiny for gene duplicates

2007
BMC Evol Biol
PMCID: 2241641
PMID: 18315839
DOI: 10.1186/1471-2148-7-215

[…] s sequenced at the Southwest Agricultural University [] and by the Silkworm Genome Research Program [].Contigs, scaffolds and ESTs from the National Center for Biotechnology Information (NCBI) [] and StellaBase [] were searched using the human OXPHOS peptides from Swiss-Prot [] to identify orthologous OXPHOS genes and their duplications in F. rubripes, zebrafish (D. rerio) and N. vectensis. Additi […]

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StellaBase institution(s)
Department of Biology, Boston University, Boston, MA, USA

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