StemBase specifications


Unique identifier OMICS_05629
Name StemBase
Restrictions to use None
Database management system MySQL
Community driven No
User data submission Not allowed
Maintained No


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus


This tool is not available anymore.

Publication for StemBase

StemBase citations


The FunGenES Database: A Genomics Resource for Mouse Embryonic Stem Cell Differentiation

PLoS One
PMCID: 2731164
PMID: 19727443
DOI: 10.1371/journal.pone.0006804

[…] ); specific analysis results of a closed dataset (SCDb); or storage and visualization of variable resources with correlative and mutual information about single transcripts (one to many relationship, StemBase) –. To facilitate data comparison between the FunGenES database and other resources, we have included a series of links to other Stem cell databases, i.e., to SCDb, Amazonia in the Study your […]


Recent developments in StemBase: a tool to study gene expression in human and murine stem cells

BMC Res Notes
PMCID: 2660910
PMID: 19284540
DOI: 10.1186/1756-0500-2-39

[…] robe set, and, in the case of probe sets in the MOE430 series, linked to the Marker Server: a compilation of genes and expression patterns of putative markers generated for a selection of the data in StemBase [] (Figure ). Probe sets can be further annotated with related PubMed articles deemed relevant [] and coloured by their content, as well as with GO annotations from NetAffx or derived by data […]

StemBase institution(s)
Ottawa Health Research Institute, Molecular Medicine Program, ON, Canada

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