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- person_outline Christine Wells
Publications for Stemformatics
Cells in experimental life sciences challenges and solution to the rapid evolution of knowledge
[…] at inevitably exist on both sides of research which asks the same question. We have identified the area where the use of biomedical ontologies can aid effective data annotation for the scMap tool and Stemformatics database to extend the analysis/content of the resources to other domain knowledge beyond their defined project scopes. It is agreed that the outreach activity like the one exemplified a […]
Human CD141+ Dendritic Cell and CD1c+ Dendritic Cell Undergo Concordant Early Genetic Programming after Activation in Humanized Mice In Vivo
[…] Illumina BeadArray Reader (Illumina). Quality control, normalization, and log 2 transformation of the raw expression data were performed using the Lumi Bioconductor package () and integrated into the Stemformatics platform www.stemformatics.org () for visualization. Transcripts differentially expressed by CD141+ DC and CD1c+ DC were identified using ANOVA analysis with p value cut-off threshold of […]
Involvement of WNT Signaling in the Regulation of Gestational Age Dependent Umbilical Cord Derived Mesenchymal Stem Cell Proliferation
[…] WikiPathways (413 pathways) and KEGG (10 pathways). A gene-set list associated with human WNT signaling pathway (150 genes, 04310 from KEGG pathways) was obtained from a public database (https://www.stemformatics.org/). […]
An atypical role for the myeloid receptor Mincle in central nervous system injury
[…] ne Array WT pico assay (902463, Affymetrix) by the Ramaciotti Centre for Genomics, University of New South Wales. The expression data (RMA background corrected, quantile normalized) are hosted by www.stemformatics.org (dataset S4M-6731) and is available from GEO (Accession GSE77986). The expression threshold was calculated as the median expression of all antigenomic probesets on the microarray (lo […]
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