Stemloc-AMA statistics

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Citations per year

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Stemloc-AMA specifications

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Unique identifier OMICS_03742
Name Stemloc-AMA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Stemloc-AMA

Stemloc-AMA citation

library_books

Evolutionary Triplet Models of Structured RNA

2009
PLoS Comput Biol
PMCID: 2725318
PMID: 19714212
DOI: 10.1371/journal.pcbi.1000483

[…] structure, given phylogeny, descendant structures and correct model); stemloc (a greedy ml heuristic, ignoring phylogeny in favor of a single-linkage clustering of the descendant structures); stemloc-ama (a posterior-decoding heuristic, maximizing the alignment's expected accuracy rather than its likelihood); and handel (ml alignment under various indel models that ignore secondary […]


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Stemloc-AMA institution(s)
Biophysics Graduate Group, Department of Mathematics and Department of Bioengineering, University of California, Berkeley, CA, USA

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