Stemloc-AMA statistics

info info

Citations per year


Popular tool citations

chevron_left Multiple nucleotide sequence alignment chevron_right

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

Stemloc-AMA specifications


Unique identifier OMICS_03742
Name Stemloc-AMA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for Stemloc-AMA

Stemloc-AMA citation


Evolutionary Triplet Models of Structured RNA

PLoS Comput Biol
PMCID: 2725318
PMID: 19714212
DOI: 10.1371/journal.pcbi.1000483

[…] structure, given phylogeny, descendant structures and correct model); stemloc (a greedy ml heuristic, ignoring phylogeny in favor of a single-linkage clustering of the descendant structures); stemloc-ama (a posterior-decoding heuristic, maximizing the alignment's expected accuracy rather than its likelihood); and handel (ml alignment under various indel models that ignore secondary […]

Want to access the full list of citations?
Stemloc-AMA institution(s)
Biophysics Graduate Group, Department of Mathematics and Department of Bioengineering, University of California, Berkeley, CA, USA

Stemloc-AMA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Stemloc-AMA