StepDeconvolution specifications


Unique identifier OMICS_15106
Name StepDeconvolution
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The image of an embryo stained for gene expression in tiff format, the information about the binary mask image, the size of pixel in the input image
Input format TIFF, TXT
Output data The result file containing raw and corrected gene expression data
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Ekaterina Myasnikova <>

Publication for StepDeconvolution

StepDeconvolution institution(s)
St Petersburg State Polytechnic University, St Petersburg, Russia; Stony Brook University, New York, NY, USA
StepDeconvolution funding source(s)
This work was supported by the National Institutes of Health (RR07801), the Civilian Research & Development Foundation (Grant Assistant Program RUB1-1578), the Netherlands Organization for Scientific Research and Russian Foundation for Basic Research (project 047.011.2004.013), the Russian Foundation for Basic Research (grants 08-01-00315a, 08-04-00712a).

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