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STEPNORM | Stepwise normalization of two-channel spotted microarrays

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Provides a data-dependent and adaptive normalization of two-channel spotted microarrays. STEPNORM performs a stepwise interrogation of a range of different normalization models and selects the appropriate method based on formal model selection criteria. It integrates a number of adjustment techniques into a common framework and provides tools for selecting amongst them as well as measuring overall performance. STEPNORM adjustment is applied to each individual array in an experiment facilitating array specific correction.

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STEPNORM forum

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STEPNORM classification

STEPNORM specifications

Unique identifier:
OMICS_01981
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

STEPNORM distribution

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No versioning.

STEPNORM support

Documentation

Credits

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Publications

Institution(s)

Department of Epidemiology and Biostatistics, Center for Bioinformatics and Molecular Biostatistics, University of California, San Francisco, CA, USA

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