StereoGene specifications


Unique identifier OMICS_19661
Name StereoGene
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some genomic annotations.
Input format BED, WIG, BedGraph, BroadPeak
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.73
Stability Stable
Maintained Yes



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  • person_outline favorov <>
  • person_outline Elena Stavrovskaya <>

Publication for StereoGene

StereoGene in publications

PMCID: 3406595
PMID: 22825473
DOI: 10.1038/cddis.2012.96

[…] titermax gold adjuvant (cytrx corp., norcross, ga, usa) followed by affinity-purification against the same antigen under non-denaturing conditions according to the manufacturer's instructions (stereogene, arcadia, ca, usa). rpgr no. 2 antibody was employed at 5 μg/ml for immunofluorescence. other antibodies used for immunofluorescence (if) or immunoblots (ib) were as following: […]

PMCID: 1626108
PMID: 17069463
DOI: 10.1371/journal.pgen.0020177

[…] michaelis-menten equation using sigmaplot (spss science)., rabbit antisera were raised against the recombinant murine cox11 (residues 40–275) and affinity-purified under non-denaturing conditions (stereogene) as previously described []. cox11 antibodies were used at 200 ng/ml for western analysis. the monoclonal antibody hsp70 was from affinity bioreagents (golden, colorado, united states) […]

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StereoGene institution(s)
Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia; Institute for Information Transmission Problems, RAS, Moscow, Russia; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, MD, USA; Laboratory of Systems Biology and Computational Genetics, Vavilov Institute of General Genetics, RAS, Moscow, Russia; Laboratory of Bioinformatics, Research Institute of Genetics and Selection of Industrial Microorganisms, Moscow, Russia
StereoGene funding source(s)
Supported by Russian Science Foundation (grant 14- 24-00155), by National Institutes of Health (grants P30 CA006973 and NCI R01CA177669), by Allegheny Health Network-Johns Hopkins Cancer Research Fund and JHU IDIES/Moore Foundation and by Russian Foundation for Basic Research (grants 14-04-01872 and 14-04-00576).

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