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Information
| Unique identifier | OMICS_26143 |
|---|---|
| Name | Stimfit |
| Software type | Application/Script |
| Interface | Graphical user interface |
| Restrictions to use | None |
| Input format | ABF,ATF,AXG,CFS |
| Output format | CFS,GDF,HDF5,IBW |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | C, C++, Python, Shell (Bash) |
| License | GNU General Public License version 2.0 |
| Computer skills | Medium |
| Version | 0.15.4 |
| Stability | Stable |
| Requirements |
NumPy, SciPy
|
| Maintained | Yes |
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Versioning
No version available
Documentation
Maintainer
- person_outline Christoph Schmidt-Hieber
Additional information
Publication for Stimfit
Stimfit citations
(16)Hippocampal LTP and contextual learning require surface diffusion of AMPA receptors
[…] g values for further optimization by the Levenberg-Marquardt algorithm.Throughout the paper, for clear presentation the stimulus artefact was blanked out. Slice electrophysiology data was analysed in Stimfit v0.13 (https://github.com/neurodroid/stimfit/wiki/Stimfit) using custom python modules (see ). […]
Sound Evoked Activity Influences Myelination of Brainstem Axons in the Trapezoid Body
[…] used. Normality was tested by the Shapiro–Wilk test. Differences were considered statistically significant at p < 0.05. Intrinsic properties as well as PSC amplitudes and kinetics were analyzed using Stimfit software (). For data acquired with patch-clamp recording (,) or in vivo single-unit recording (see ); n is the number of neurons, with one cell per brain slice (to enable anatomical reconstru […]
AMPA receptor specific biogenesis complexes control synaptic transmission and intellectual ability
[…] ain slices obtained from at least three different animals from three different pups; recordings from virally transduced and non-infected control cells were performed in the same slices.Data analysis. Stimfit 0.9 software and Igor Pro (WaveMetrics, USA) were used to analyse data from spontaneous and evoked EPSCs. The rise time 20–80% was determined as the time interval between the points correspond […]
Compromised neuroplasticity in cigarette smokers under nicotine withdrawal is restituted by the nicotinic α4β2 receptor partial agonist varenicline
[…] c comparisons were conducted using Student’s t-tests (paired samples, two-tailed, p < 0.05, not corrected for multiple comparisons).EMG measures were analyzed using custom python scripts based on the Stimfit library (version 0.14; available open source http://www.stimfit.org/doc/sphinx/). Statistical analysis was carried out with SPSS (version 23.0, IBM Corp.). […]
Silent synapses generate sparse and orthogonal action potential firing in adult born hippocampal granule cells
[…] 1 (WaveMetrics, Lake Oswego, Oregon) and the CFS library support from CED (Cambridge Electronic Design, Cambridge, UK). Data analysis was performed using the custom made open source analysis software Stimfit (https://neurodroid.github.io/stimfit, ) and Mathematica 10 (Wolfram Research, US). As newborn DCX-positive granule cells show a remarkably high input resistance (typical range 1.5–10 GΩ), the […]
Somatostatin positive interneurons in the dentate gyrus of mice provide local and long range septal synaptic inhibition
[…] = (A τ1 + B τ2) / (A + B)]. Peak amplitudes were measured in relation to the preceding baseline in a 5–10 ms time window after the onset of stimulation. Data were analyzed using custom made software (Stimfit 0.13.2, https://code.google.com/p/stimfit/, courtesy of C. Schmidt-Hieber, University College London, UK).Statistical analysis was performed using SigmaPlot 11 (Systat Software Inc., IL, USA) […]
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