Stimfit statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Stimfit
info

Tool usage distribution map

This map represents all the scientific publications referring to Stimfit per scientific context
info info

Associated diseases

This word cloud represents Stimfit usage per disease context
info

Popular tool citations

chevron_left Data analysis Image data analysis Image visualization chevron_right
Want to access the full stats & trends on this tool?

Protocols

Stimfit specifications

Information


Unique identifier OMICS_26143
Name Stimfit
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format ABF,ATF,AXG,CFS
Output format CFS,GDF,HDF5,IBW
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++, Python, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Medium
Version 0.15.4
Stability Stable
Requirements
NumPy, SciPy
Maintained Yes

Download


download.png
github.png
debian.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Christoph Schmidt-Hieber

Additional information


http://www.stimfit.org/tutorial/minis.dat https://github.com/neurodroid/stimfit/wiki

Publication for Stimfit

Stimfit citations

 (16)
library_books

Hippocampal LTP and contextual learning require surface diffusion of AMPA receptors

2017
Nature
PMCID: 5683353
PMID: 28902836
DOI: 10.1038/nature23658

[…] g values for further optimization by the Levenberg-Marquardt algorithm.Throughout the paper, for clear presentation the stimulus artefact was blanked out. Slice electrophysiology data was analysed in Stimfit v0.13 (https://github.com/neurodroid/stimfit/wiki/Stimfit) using custom python modules (see ). […]

library_books

Sound Evoked Activity Influences Myelination of Brainstem Axons in the Trapezoid Body

2017
PMCID: 5566870
PMID: 28760859
DOI: 10.1523/JNEUROSCI.3728-16.2017

[…] used. Normality was tested by the Shapiro–Wilk test. Differences were considered statistically significant at p < 0.05. Intrinsic properties as well as PSC amplitudes and kinetics were analyzed using Stimfit software (). For data acquired with patch-clamp recording (,) or in vivo single-unit recording (see ); n is the number of neurons, with one cell per brain slice (to enable anatomical reconstru […]

library_books

AMPA receptor specific biogenesis complexes control synaptic transmission and intellectual ability

2017
Nat Commun
PMCID: 5500892
PMID: 28675162
DOI: 10.1038/ncomms15910

[…] ain slices obtained from at least three different animals from three different pups; recordings from virally transduced and non-infected control cells were performed in the same slices.Data analysis. Stimfit 0.9 software and Igor Pro (WaveMetrics, USA) were used to analyse data from spontaneous and evoked EPSCs. The rise time 20–80% was determined as the time interval between the points correspond […]

library_books

Compromised neuroplasticity in cigarette smokers under nicotine withdrawal is restituted by the nicotinic α4β2 receptor partial agonist varenicline

2017
Sci Rep
PMCID: 5431184
PMID: 28469204
DOI: 10.1038/s41598-017-01428-6

[…] c comparisons were conducted using Student’s t-tests (paired samples, two-tailed, p < 0.05, not corrected for multiple comparisons).EMG measures were analyzed using custom python scripts based on the Stimfit library (version 0.14; available open source http://www.stimfit.org/doc/sphinx/). Statistical analysis was carried out with SPSS (version 23.0, IBM Corp.). […]

library_books

Silent synapses generate sparse and orthogonal action potential firing in adult born hippocampal granule cells

2017
eLife
PMCID: 5580881
PMID: 28826488
DOI: 10.7554/eLife.23612.014

[…] 1 (WaveMetrics, Lake Oswego, Oregon) and the CFS library support from CED (Cambridge Electronic Design, Cambridge, UK). Data analysis was performed using the custom made open source analysis software Stimfit (https://neurodroid.github.io/stimfit, ) and Mathematica 10 (Wolfram Research, US). As newborn DCX-positive granule cells show a remarkably high input resistance (typical range 1.5–10 GΩ), the […]

call_split

Somatostatin positive interneurons in the dentate gyrus of mice provide local and long range septal synaptic inhibition

2017
eLife
PMCID: 5395294
PMID: 28368242
DOI: 10.7554/eLife.21105.022
call_split See protocol

[…] = (A τ1 + B τ2) / (A + B)]. Peak amplitudes were measured in relation to the preceding baseline in a 5–10 ms time window after the onset of stimulation. Data were analyzed using custom made software (Stimfit 0.13.2, https://code.google.com/p/stimfit/, courtesy of C. Schmidt-Hieber, University College London, UK).Statistical analysis was performed using SigmaPlot 11 (Systat Software Inc., IL, USA) […]


Want to access the full list of citations?
Stimfit institution(s)
Institute of Science and Technology Austria, Klosterneuburg, Austria; Institute for Biomedical Research, University College London, London, UK; Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK
Stimfit funding source(s)
Supported by grants from the European Research Council, the Wellcome Trust and the Gatsby Charitable Foundation; the Alexander von Humboldt Foundation.

Stimfit reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Stimfit