StoichiolyzeR specifications

Information


Unique identifier OMICS_31259
Name StoichiolyzeR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Birgit Schilling

Publication for StoichiolyzeR

StoichiolyzeR citation

library_books

Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data Independent Acquisitions (SWATH)

2016
J Am Soc Mass Spectrom
PMCID: 5059418
PMID: 27590315
DOI: 10.1007/s13361-016-1476-z

[…] high stoichiometry of 92.3%. Supplementary Figure  demonstrates how to set up the Skyline document for peptides containing two Kac residues. In addition, we have developed an in-house algorithm, the StoichiolyzeR, to automate the determination of acylation site stoichiometries from peptides with multiple lysines. Supplementary Figure  indicates specific details and considerations regarding stoich […]

StoichiolyzeR institution(s)
Buck Institute for Research on Aging, Novato, CA, USA
StoichiolyzeR funding source(s)
Supported by the NIH National Institute of Diabetes and Digestive and Kidney Diseases NIH-NIDDK grant R24 DK085610; a NIH T32 fellowship (T32 AG000266) and the NIH shared instrumentation grant for the TripleTOF 6600 system at the Buck Institute (1S10 OD016281).

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