STR-realigner specifications


Unique identifier OMICS_16238
Name STR-realigner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The sequence reads to realign in SAM/BAM file, a list of STR regions, the reference genome.
Output data The realigned sequence reads in SAM/BAM file.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 0.1.01
Stability Stable
Maintained Yes




No version available



  • person_outline Kaname Kojima

Publication for STR-realigner

STR-realigner institution(s)
Tohoku Medical Megabank Organization, Tohoku University, Seiryo-machi, Aoba-ku, Sendai, Japan
STR-realigner funding source(s)
This work was partially supported by grants from the Reconstruction Agency, the Ministry of Education, Culture, Sports, Science and Technology (MEXT), the Center of Innovation Program from Japan Science, Technology Agency (JST), and the Japan Agency for Medical Research and Development (AMED).

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