StrainPhlAn specifications


Unique identifier OMICS_16926
Name StrainPhlAn
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of metagenomic samples and reference genomes.
Input format FASTA, FASTQ
Output data The sample-specific strains of all species present in the samples and the genome-specific strains from reference genomes.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Duy Tin Truong <>

Publication for StrainPhlAn

StrainPhlAn institution(s)
Centre for Integrative Biology, University of Trento, Trento, Italy; Biostatistics Department, Harvard School of Public Health, Boston, MA, USA; The Broad Institute, Cambridge, MA, USA
StrainPhlAn funding source(s)
This work was supported in part by NIH grants R01HG005969 and U54DE023798, NSF grant DBI-1053486 and Army Research Office grant W911NF-11-1-0473, Fondazione Caritro grant Rif. Int.2014.0325, European Union H2020 Marie-curie grant (707345), a European Union FP7 Marie-Curie grant (PCIG13-618833), MIUR grant FIR RBFR13EWWI, Fondazione Caritro grant Rif. Int.2013.0239, Leo Pharma Research Foundation, and Terme di Comano grants.

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