StrainPhlAn specifications

Unique identifier:
OMICS_16926
Interface:
Command line interface
Input data:
A set of metagenomic samples and reference genomes.
Output data:
The sample-specific strains of all species present in the samples and the genome-specific strains from reference genomes.
Programming languages:
Python
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, FASTQ
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

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StrainPhlAn distribution

download

StrainPhlAn support

Maintainer

  • Duy Tin Truong <>

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Credits

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Publications

Institution(s)

Centre for Integrative Biology, University of Trento, Trento, Italy; Biostatistics Department, Harvard School of Public Health, Boston, MA, USA; The Broad Institute, Cambridge, MA, USA

Funding source(s)

This work was supported in part by NIH grants R01HG005969 and U54DE023798, NSF grant DBI-1053486 and Army Research Office grant W911NF-11-1-0473, Fondazione Caritro grant Rif. Int.2014.0325, European Union H2020 Marie-curie grant (707345), a European Union FP7 Marie-Curie grant (PCIG13-618833), MIUR grant FIR RBFR13EWWI, Fondazione Caritro grant Rif. Int.2013.0239, Leo Pharma Research Foundation, and Terme di Comano grants.

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