Strand NGS pipeline

Strand NGS specifications


Unique identifier OMICS_01120
Name Strand NGS
Alternative name Avadis NGS
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use License purchase required
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes


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Strand NGS citation

PMCID: 3986730

[…] of the snv call were as follows: filtered sequencing quality ≤20, filtered pcr duplications, consensus base quality ≤50, total coverage <10, variants read depth <3, and the decibel score by avadis-ngs v1.3 <50. the decibel score, read depth of the snv allele and snv allele frequency were used to sort these candidates. the iterative genomic viewer was used to check the candidates […]

Strand NGS institution(s)
Strand Genomics, Inc, India

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