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Information


Unique identifier OMICS_02277
Name STRAP
Alternative name Software Tool for Rapid Annotation of Proteins
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Software Tool for Rapid Annotation of Proteins

STRAP citations

 (25)
call_split

Comparative proteome and peptidome analysis of the cephalic fluid secreted by Arapaima gigas (Teleostei: Osteoglossidae) during and outside parental care

2017
PLoS One
PMCID: 5655490
PMID: 29065179
DOI: 10.1371/journal.pone.0186692
call_split See protocol

[…] king specific CE-MS-identified peptides to sequences obtained with LC-MS/MS [].Using the complete catalogue of peptides detected through the LC-MS/MS, Gene Ontology (GO) analyses were performed using STRAP v 1.5. software []. Also, aiming to identify secreted (extracellular) peptides, a GO analysis was also made for those peptides significantly different among groups after unadjusted Wilcoxon test […]

library_books

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages

2017
PLoS One
PMCID: 5587285
PMID: 28877269
DOI: 10.1371/journal.pone.0184307

[…] . Transmembrane domains and signal peptide sequences were identified using TM-Pred and SignalP respectively []. Coiled-coils were characterised using the Robinson algorithm implemented through STRAP (Software Tool for Rapid Annotation of Proteins) []. Cellular localisation of proteins was predicted by PSORTb []. tRNAs and were classified using tRNA-scanSE and Aragorn, and rho-independent terminato […]

library_books

Isolation and mass spectrometry analysis of urinary extraexosomal proteins

2016
Sci Rep
PMCID: 5090863
PMID: 27805059
DOI: 10.1038/srep36331

[…] rt of the protein protruding from the outer bilayer of exosomes.To further investigate the protein hit data we used an open source software, The Software Tool for Researching Annotations of Proteins (STRAP) developed at the Cardiovascular Proteomics Center of Boston University School of Medicine (Boston, MA) (www.bumc.bu.edu/cardiovascularproteomics/cpctools/strap/) to generate a graphic illustrat […]

library_books

Comprehensive and quantitative proteomic analyses of zebrafish plasma reveals conserved protein profiles between genders and between zebrafish and human

2016
Sci Rep
PMCID: 4829857
PMID: 27071722
DOI: 10.1038/srep24329

[…] PPD, we downloaded proteins that have been reported in at least two human plasma studies and obtained a list of 3,638 unique UniProtKB accessions. GO annotation of these proteins was retrieved using STRAP and plotted (). As compared to zebrafish plasma (), for both Biological process and Molecular function, top two terms were the same and the corresponding percentages are also similar. Terms at l […]

library_books

A Proteomic Approach for the Identification of Up Regulated Proteins Involved in the Metabolic Process of the Leiomyoma

2016
Int J Mol Sci
PMCID: 4848996
PMID: 27070597
DOI: 10.3390/ijms17040540

[…] g Genes) database search. The different expression proteins thus identified were analyzed by PANTHER 9.0 (Protein Analysis through Evolutionary Relationships; http://www.pantherdb.org) and STRAP 1.5 (Software Tool for Rapid Annotation of Proteins: Cardiovascular Proteomics Center, Boston University School of Medicine, Boston, MA, USA). Proteins were then classified according to their involvement i […]

library_books

Mass Spectrometry Offers Insight into the Role of Ser/Thr/Tyr Phosphorylation in the Mycobacteria

2016
Front Microbiol
PMCID: 4751927
PMID: 26904014
DOI: 10.3389/fmicb.2016.00141

[…] ing the Protein Information Resource (PIR) batch peptide match tool against the Uniprot H37Rv proteome (Chen et al., ). GO analysis of the proteins corresponding to these shared phosphopeptides using STRAP 1.5 (Bhatia et al., ) revealed that the associated GO terms relate to broad regulatory functions, such as the regulation of cell metabolism, cellular processes, and growth (Figures ). While this […]

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STRAP institution(s)
Cardiovascular Proteomics Center, Boston University School of Medicine, Boston, MA, USA

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