StrBioLib specifications

Information


Unique identifier OMICS_30510
Name StrBioLib
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU Lesser General Public License version 2.1
Computer skills Medium
Version 1.3
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline John-Marc Chandonia

Publication for StrBioLib

StrBioLib citations

 (2)
library_books

The structurally disordered paramyxovirus nucleocapsid protein tail domain is a regulator of the mRNA transcription gradient

2017
Sci Adv
PMCID: 5291697
PMID: 28168220
DOI: 10.1126/sciadv.1602350

[…] identical hit cutoff values. All average scores were then transformed to a scale of 0 to 10 and plotted as a function of MeV-Edm N residues. MeV-Edm N secondary structure prediction was based on the StrBioLib library of the Pred2ary program (), embedded in the MeDor package (). For the identification of disordered regions in MeV-Edm N based on DomCut (), paramyxovirus N protein sequences were ali […]

library_books

MeDor: a metaserver for predicting protein disorder

2008
BMC Genomics
PMCID: 2559890
PMID: 18831791
DOI: 10.1186/1471-2164-9-S2-S25

[…] MeDor is a Java2 application that provides a graphical output summarizing the predictions of the following programs: a secondary structure prediction (SSP), based on the StrBioLib library of the Pred2ary program [,], Hydrophobic Cluster Analysis (HCA) [], IUPred [], Prelink [], RONN [], FoldUnfold [], DisEMBL [], FoldIndex [], GlobPlot2 [], DISPROT VL3 and VL3H [], DI […]

StrBioLib institution(s)
Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
StrBioLib funding source(s)
Supported by grants from the NIH (R01-GM39900, R01- GM073109, and 1-P50-GM62412) and by the U.S. Department of Energy under contract DE-AC02-05CH11231.

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