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StreAM-Tg specifications


Unique identifier OMICS_18748
Name StreAM-Tg
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Julia
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline Sven Jager

Publication for StreAM-Tg

StreAM-Tg citation


Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools

Front Genet
PMCID: 5780412
PMID: 29403526
DOI: 10.3389/fgene.2017.00231

[…] the investigation of folding kinetics of aptamers and co-transcriptional folding kinetics using coarse-grained SOP model and, BarMap and helix-based computational approach, respectively. A new method StreAM-Tg (Jager et al., ) also allows analyzing structural transitions. This method gain insights into RNA dynamics based on a coarse-grained representation of RNA MD simulations.Current modeling met […]

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StreAM-Tg institution(s)
Department of Biology, TU Darmstadt, Darmstadt, Germany; Department of Computer Science, TU Dresden, Dresden, Germany; Department of Biology, Department of Computer Science, Department of Physics, TU Darmstadt, Darmstadt, Germany
StreAM-Tg funding source(s)
Supported by the LOEWE project CompuGene of the Hessen State Ministry of Higher Education, Research and the Arts and by the DFG, through the Cluster of Excellence cfaed as well as the CRC HAEC.

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