StreamingTrim specifications


Unique identifier OMICS_05196
Name StreamingTrim
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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  • person_outline Alessio Mengoni <>

StreamingTrim article

StreamingTrim citation

PMCID: 5578044

[…] deposited in the national center for biotechnology information (ncbi) “sequence read archive” (sra) under the project accession prjna316056. , sequence quality was ensured by trimming reads using streamingtrim 1.0 [60], with a quality cutoff of 20. bowtie2 [61] was used to screen out human-derived sequences from metagenomic data with the latest version of the human genome available […]

StreamingTrim institution(s)
Department of Biology, University of Florence, Firenze, Italy; Consiglio per la Ricerca e la Sperimentazione in Agricoltura, Centro di Ricerca per lo Studio delle Relazioni tra Pianta e Suolo, Roma, Italy
StreamingTrim funding source(s)
Supported by a fellowship from MIPAAF and by intramural funding of the university of Florence.

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