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Streamlined Analysis and Annotation Pipeline for RRBS data SAAP-RRBS

Integrates read quality assessment/clean-up, alignment, methylation data extraction, annotation, reporting and visualization. SAAP-RRBS facilitates a rapid transition from sequencing reads to a fully annotated CpG methylation report to biological interpretation.

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SAAP-RRBS classification

SAAP-RRBS specifications

Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

SAAP-RRBS distribution

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No versioning.

SAAP-RRBS support

Maintainer

  • Zhifu Sun <>

Credits

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Publications

Institution(s)

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research; Department of Medical Oncology, Mayo Clinic College of Medicine, Chinahester, MN, USA; Department of Cancer Biology, Mayo Clinic Comprehensive Cancer Center, Jacksonville, FL, USA

Funding source(s)

Center for Individualized Medicine at Mayo Clinic Rochester, MN, and the 26.2 with Donna Foundation

Link to literature

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